PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008270.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 411aa MW: 45443.7 Da PI: 4.4314

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008270.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	234	281	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + Er+RR +++++ +Lr+++P+ +K++Ka+i+ A++YI++Lq Cse_sc008270.1_g020.1 234 TKSLISERKRRIGMKEKLYTLRTMVPNI-----TKMDKASIVGDATRYIQDLQ 281 555678*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MESFEYSIGH SNDSNFNIPQ PDFIPETDFE NLLSAIQCET KDPNDIFCVE SECNHFTNAC 60 TAFQLPPQLY DDNEAIDGVG IDIDIDIDID IHKGNGTCNG NDPGIGCYDV MDPNLYDHNE 120 AIDDIGVDFD ISSGSGSGIC NANDIGNAIG FYDEMDPNLY DHNEAIDVIG IDIDNGTDSG 180 IGCYEDMDPD LYLIWDEDED DVKASGDGDS SETVTTRNPN TQRRSGGGVK GDRTKSLISE 240 RKRRIGMKEK LYTLRTMVPN ITKMDKASIV GDATRYIQDL QAQARNLRSE IAKIEATSKQ 300 KKALHNSKMT HVSNSLPILK KISKLEMFHV EEKGYYLKVV CNKGRGVAVA LLKALESITG 360 FQVESSNLAT VGDTYVLTFT LKVAAHEFDK RPPNLKLRLS GAFLKQGFKF K

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MESFEYSIGH SNDSNFNIPQ PDFIPETDFE NLLSAIQCET KDPNDIFCVE SECNHFTNAC  60
TAFQLPPQLY DDNEAIDGVG IDIDIDIDID IHKGNGTCNG NDPGIGCYDV MDPNLYDHNE  120
AIDDIGVDFD ISSGSGSGIC NANDIGNAIG FYDEMDPNLY DHNEAIDVIG IDIDNGTDSG  180
IGCYEDMDPD LYLIWDEDED DVKASGDGDS SETVTTRNPN TQRRSGGGVK GDRTKSLISE  240
RKRRIGMKEK LYTLRTMVPN ITKMDKASIV GDATRYIQDL QAQARNLRSE IAKIEATSKQ  300
KKALHNSKMT HVSNSLPILK KISKLEMFHV EEKGYYLKVV CNKGRGVAVA LLKALESITG  360
FQVESSNLAT VGDTYVLTFT LKVAAHEFDK RPPNLKLRLS GAFLKQGFKF K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	1e-60	bHLH family protein