PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008285.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 788aa MW: 90463.5 Da PI: 8.573

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008285.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.6e-16	132	225	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA+++GF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++r+++ + tgCka+++ ++ + k+++t ++ Cse_sc008285.1_g040.1 132 YMKYASKAGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSTKYRLTVFDI 218 99**********998887.8898*********99988888999888899999999***********9******* PP FAR1 84 eHnHela 90 HnHel Cse_sc008285.1_g040.1 219 IHNHELE 225 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence
MDSIPNYSVS SDPSSSITES ATESDRFSSD PSSITESVVV SVTESIYEDV VVNDDVSAKY 60 TEEIVAYEHG DESAVMMFLL KLNALKTPES FSTHSNFDTP GGTIYYIPKV PVDVLLAKGN 120 VFNSVDECIS AYMKYASKAG FVVRKSCQKR LRSGIVKQKY LVCNREGCPK GIHVDTLDLE 180 NSDKQKRSSN LHITGCKARV MFELIPGSTK YRLTVFDIIH NHELEHKEYK HLSKTERQLT 240 YAEQLFIVKA KSVNIGATRA HHLLTGLKGS YLLVHGTTVD FKKFFRSVNC YIGDSDAQML 300 IAKMENRQKH VPDFSFDYLV ENAELSAIFW ADEVSKYNYK EFCDVVSFDA TYRTNKYKMM 360 FVPFIAIDNH RKCVTICSKI YDHTDFKRKF NQIWLTKMFR IRSCWIPAFF VDSPLCGLMR 420 TTSRSESENS FFSHFTNSGS TLMNFMNCFE TAMEKQRHIQ ERLDHKSIDS VPTLRTYLKI 480 ERHASKVYTR PLFELVQAEI FVGTWFCQID TKSLVEGSEV SVIKEKKFVD EVMEKKKAKK 540 KEKFKKKGDD NDKNEEEEEP INLFYREDGL YKNANVEMIP NQYILRRWTK NLIPASLRNK 600 RNMYWLLCRH IFCVFKNANV EMIPNQYILR RWTKNLIPAG LRNKRNKYGE KNDIVENYAN 660 EATSIVDHCV HMLSKDETRL AAFIEKLKLL KLDVEADCSN PPSKDKLDNL EELVGVPKPP 720 VVAVKNPSGC KPKGHEKSRI KGGKEQAIDE SSVNRNACSV CGAKDGHNKR TCPNKYRVQD 780 DLVQSEAT

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence

MDSIPNYSVS SDPSSSITES ATESDRFSSD PSSITESVVV SVTESIYEDV VVNDDVSAKY  60
TEEIVAYEHG DESAVMMFLL KLNALKTPES FSTHSNFDTP GGTIYYIPKV PVDVLLAKGN  120
VFNSVDECIS AYMKYASKAG FVVRKSCQKR LRSGIVKQKY LVCNREGCPK GIHVDTLDLE  180
NSDKQKRSSN LHITGCKARV MFELIPGSTK YRLTVFDIIH NHELEHKEYK HLSKTERQLT  240
YAEQLFIVKA KSVNIGATRA HHLLTGLKGS YLLVHGTTVD FKKFFRSVNC YIGDSDAQML  300
IAKMENRQKH VPDFSFDYLV ENAELSAIFW ADEVSKYNYK EFCDVVSFDA TYRTNKYKMM  360
FVPFIAIDNH RKCVTICSKI YDHTDFKRKF NQIWLTKMFR IRSCWIPAFF VDSPLCGLMR  420
TTSRSESENS FFSHFTNSGS TLMNFMNCFE TAMEKQRHIQ ERLDHKSIDS VPTLRTYLKI  480
ERHASKVYTR PLFELVQAEI FVGTWFCQID TKSLVEGSEV SVIKEKKFVD EVMEKKKAKK  540
KEKFKKKGDD NDKNEEEEEP INLFYREDGL YKNANVEMIP NQYILRRWTK NLIPASLRNK  600
RNMYWLLCRH IFCVFKNANV EMIPNQYILR RWTKNLIPAG LRNKRNKYGE KNDIVENYAN  660
EATSIVDHCV HMLSKDETRL AAFIEKLKLL KLDVEADCSN PPSKDKLDNL EELVGVPKPP  720
VVAVKNPSGC KPKGHEKSRI KGGKEQAIDE SSVNRNACSV CGAKDGHNKR TCPNKYRVQD  780
DLVQSEAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-22	FAR1 family protein