PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008335.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27371.4 Da    PI: 9.383
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008335.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45e-30959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  Cse_sc008335.1_g020.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59
                           79***********************************************96 PP
2K-box1011.6e-33751741100
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            y++ + +s++++ + s++ e+akLk++ie Lq+++Rhl+Ge+L+sL+lkeLq LeqqL+++lk++R +Kn+l++e+i+ lqkk k++q
  Cse_sc008335.1_g020.1  75 YAEMQLTSTHNESQGSWTLEHAKLKARIELLQKSKRHLMGEELDSLTLKELQGLEQQLDTALKHVRLRKNQLMFESISALQKKDKDMQ 162
                            56778889999999************************************************************************** PP

                  K-box  89 eenkaLrkklee 100
                            e+n+ L+k+++e
  Cse_sc008335.1_g020.1 163 ERNNILSKQIKE 174
                            *********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD  60
SSMDRILERY ERYSYAEMQL TSTHNESQGS WTLEHAKLKA RIELLQKSKR HLMGEELDSL  120
TLKELQGLEQ QLDTALKHVR LRKNQLMFES ISALQKKDKD MQERNNILSK QIKEKEKDAA  180
HHDKEPQIHA AVPSLHLGIL NNCDAHQAGS DWEVEEIPRP AQPLTIMPPW MVQHMNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-92MIKC_MADS family protein