PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008348.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 663aa    MW: 74700.4 Da    PI: 5.1922
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008348.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.8e-22119218197
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+kvlt sd++++g +++ +k+a+++     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD+++F 
  Cse_sc008348.1_g010.1 119 FCKVLTASDTSTHGGFSVLRKHANDClppldMTQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLVAGDSFIFL 206
                            99*********************999****9666677789************************************************ PP

                            E-SSSEE..EEEEE CS
                     B3  84 ldgrsefelvvkvf 97 
                              + +++el+v++ 
  Cse_sc008348.1_g010.1 207 --RGENGELRVGIK 218
                            ..449999999986 PP
2Auxin_resp106.23.7e-35245324183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha+st++ F v+Y+Pr+  s+F+++++k+ +a++++++vGmRfkm fe+eds+err++Gt+vgv+d++p +W++SkWrsLk
  Cse_sc008348.1_g010.1 245 ASHAVSTQTLFVVYYKPRT--SQFIISLNKYIEAINNNFTVGMRFKMPFEGEDSPERRFTGTIVGVEDISP-QWEDSKWRSLK 324
                            789***************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MDSTVLSSED LLYKELWKAC TGPLVDIPRD GESVFYFPQG HMEQLEASTN QDMKERIPQF  60
NLKSKILCRV VHTQLLAEKE TDEVYAQITL QPEANQSEID PTSPDECLPE PPRPNVQSFC  120
KVLTASDTST HGGFSVLRKH ANDCLPPLDM TQPTPTQELV AKDLHGFEWR FKHIFRGQPR  180
RHLLTTGWST FVTCKRLVAG DSFIFLRGEN GELRVGIKRF ARQPSSMPTS VISSQSMHLG  240
VLATASHAVS TQTLFVVYYK PRTSQFIISL NKYIEAINNN FTVGMRFKMP FEGEDSPERR  300
FTGTIVGVED ISPQWEDSKW RSLKVQWDEP ASILRPERVS PWEIEPFGTP VPTSLVESVA  360
PKCKRPRPPS EVPNLEPACP TASSVWNPSG QISCTPDGQT SDYQRSWLRN QTESGTTECH  420
TRTPMEASWL SSPIMGSHNF FVDEMEDQKG LPAWSAHTIQ TPVDMKRSES ISSFRIFGFD  480
LKSPTKGDII PETAPLTSSN VFHTFADEYM PSPLSLGISD QKSDLSKDCK DQGQLQVSPK  540
EVQSKQSTCT RSRTKVQMQG IAVGRAVDLT ALKGYDELIN ELEEMFEIKG ELYPRNQWEI  600
IFTDDEGDMM LMGDHPWEEF CSMVKRILIC SSQDVRKMRA GIKHSFSSID NEVSGFSLEA  660
AEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364368KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein