PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008379.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27204.8 Da    PI: 5.4212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008379.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-194394556
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++f++eq++ Le+lF+ ++++  +++ e+A++lgL  rqV +WFqNrRa++k
  Cse_sc008379.1_g080.1 43 RRFSDEQIKSLESLFKTENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWK 94
                           47*************************************************9 PP
2HD-ZIP_I/II122.61.9e-3942132393
            HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                             rr+s+eq+k+LE+ F++e+kLep++K e+areLgl+prqva+WFqnrRAR+k+kq+E+dy++Lk+ yd+l+++ e+L+ke+++L ++
  Cse_sc008379.1_g080.1  42 SRRFSDEQIKSLESLFKTENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYSTLKADYDSLSDRFESLKKEKHALLQQ 129
                            69************************************************************************************99 PP

            HD-ZIP_I/II  91 lke 93 
                            l++
  Cse_sc008379.1_g080.1 130 LRD 132
                            986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MLRGANSASP TTENTYDDVF KATPANATPK KKNKHNNNNM NSRRFSDEQI KSLESLFKTE  60
NKLEPRKKLE MARELGLHPR QVAIWFQNRR ARWKSKQVEQ DYSTLKADYD SLSDRFESLK  120
KEKHALLQQL RDLCSQLKEP HEGIKDFESG SENGELNNGN YSSGFSEPLE QDMTICSDED  180
DPMKHSHKEE ELGYVNNAGD HRVSDENVGN FDCLSSLFDQ SSTGTCSSNW WDLWSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-40HD-ZIP family protein