PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008426.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23500.1 Da    PI: 7.1462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008426.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-191568356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            R +ft++q+  Le ++e +  p  +++ +LA+klgL  rqV +WFqN+Ra+ k
  Cse_sc008426.1_g010.1 15 GRKRFTDKQISFLEYMYETQTRPELRMKHQLANKLGLHPRQVAIWFQNKRARSK 68
                           6999************************************************99 PP
2HD-ZIP_I/II1025.2e-3316105392
            HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                            ++r++++q+++LE ++e++++ e + K++la++Lgl+prqva+WFqn+RAR k++q+E++y++Lk++y++l+ + e+L+ke+++L ++
  Cse_sc008426.1_g010.1  16 RKRFTDKQISFLEYMYETQTRPELRMKHQLANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKHNYETLALKSESLKKENQALLSQ 103
                            79************************************************************************************99 PP

            HD-ZIP_I/II  91 lk 92 
                            l+
  Cse_sc008426.1_g010.1 104 LE 105
                            97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MAAHAAEARK NKNEGRKRFT DKQISFLEYM YETQTRPELR MKHQLANKLG LHPRQVAIWF  60
QNKRARSKSR QIEQEYNTLK HNYETLALKS ESLKKENQAL LSQLEMLRSV AERHQEDSRR  120
HDSTGNSSGE DSYDRVTNSP TKSDANVTLG NCSKEIDVPF YDSVAYFEDG SKFLNFEELG  180
SVNVWEETAC SLGPDVQKWW EF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-34HD-ZIP family protein