PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008451.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 441aa MW: 48601.6 Da PI: 8.9666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008451.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc008451.1_g010.1 65 FVCEICSKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.1	0.0006	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Cse_sc008451.1_g010.1 142 WKCEKCSKKYAVQSDWKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MMSGDGFSSS PSSLSAFIQE PSSNPNPNPN SSNSSKRKRN LPGTPDPDAE VIALSPRSLM 60 ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRNKLE IVKKKVYICP EVSCVHHDPS 120 RALGDLTGVK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTIFSRK 180 DSFITHRAFC DALTEENSRL ASFPLMSSNT NLNFRHELMM MNGGGGGGLR YPGMFGGGML 240 EGNLDGNVLK PRLPNWLDQN GNESHLENPG NSSILGSSSL NNNNGGMLSS EMVQWMNTSQ 300 EAMAPGAYSG LQLKEEENKG EMQFNSMYNN YTTSTAPQPS LTPHMSATAL LQKAAQMGST 360 RSTNHGDTNA FGLMSTSDFS NSDGMVMMMM SSIGSKESKG NGPNESHTTR DFLGVGANER 420 RPFNLQQNLF MFTPSMDNSS V

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MMSGDGFSSS PSSLSAFIQE PSSNPNPNPN SSNSSKRKRN LPGTPDPDAE VIALSPRSLM  60
ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRNKLE IVKKKVYICP EVSCVHHDPS  120
RALGDLTGVK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTIFSRK  180
DSFITHRAFC DALTEENSRL ASFPLMSSNT NLNFRHELMM MNGGGGGGLR YPGMFGGGML  240
EGNLDGNVLK PRLPNWLDQN GNESHLENPG NSSILGSSSL NNNNGGMLSS EMVQWMNTSQ  300
EAMAPGAYSG LQLKEEENKG EMQFNSMYNN YTTSTAPQPS LTPHMSATAL LQKAAQMGST  360
RSTNHGDTNA FGLMSTSDFS NSDGMVMMMM SSIGSKESKG NGPNESHTTR DFLGVGANER  420
RPFNLQQNLF MFTPSMDNSS V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-100	C2H2 family protein