PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008669.1_g010.2
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 25966.5 Da    PI: 5.4901
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008669.1_g010.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n + rqvtfskRr g+lKKA+EL vLCda+va+iifs tgkl+eyss
  Cse_sc008669.1_g010.2  9 KKIDNITARQVTFSKRRRGLLKKAQELAVLCDADVALIIFSATGKLFEYSS 59
                           68***********************************************96 PP
2K-box44.18.8e-161021722999
                  K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                re+R+l+G+dL+ L + eL++Le+ L+ +l+++ + K+e + ++i+ lq+k  +l eenk L+++++
  Cse_sc008669.1_g010.2 102 ADKSRELRQLQGQDLQGLAIDELEHLETLLQGGLSRVLKAKDERFGNEISSLQEKGAKLLEENKLLKQQMM 172
                            4446899*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLLK KAQELAVLCD ADVALIIFSA TGKLFEYSSS  60
SMQEILGKYK LHSNNSLDKV DEPSLNLQLV ESDEVRFCKE IADKSRELRQ LQGQDLQGLA  120
IDELEHLETL LQGGLSRVLK AKDERFGNEI SSLQEKGAKL LEENKLLKQQ MMMISNGKRP  180
RTATDIDNLV ITPEDQGQSS ESVTTNVYSC NSSPPTDDDG SDTSLKLGLP FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-61MIKC_MADS family protein