PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008670.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27515.3 Da    PI: 7.8313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008670.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.7e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELSvLCda+va+iifs++gkl+e++s
  Cse_sc008670.1_g010.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDADVALIIFSNRGKLFEFCS 59
                           79***********************************************96 PP
2K-box73.27.6e-2581170799
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             + +++ ++++++e+ kLk+++e+Lq++   + GedLe+LslkeL+qLe+qL++ lk+iRs +++ +l+ ++elq kek+  e+n+aL
  Cse_sc008670.1_g010.1  81 DRSTTNAEQNSYKEYIKLKAKYESLQQQ---VCGEDLEPLSLKELEQLERQLDSTLKQIRSMRTQSMLDRLSELQLKEKMWLEANRAL 165
                            456778899*****************98...********************************************************* PP

                  K-box  95 rkkle 99 
                            +++le
  Cse_sc008670.1_g010.1 166 QEQLE 170
                            *9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD ADVALIIFSN RGKLFEFCST  60
SNMLKMLERY QNCTYGSMEI DRSTTNAEQN SYKEYIKLKA KYESLQQQVC GEDLEPLSLK  120
ELEQLERQLD STLKQIRSMR TQSMLDRLSE LQLKEKMWLE ANRALQEQLE VVYAENQAGP  180
SWANCTYEQQ HEHPRSQGFF QPLDGNPNLQ IGYNTVGSSQ LTATTNGQNL NGLVPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-100MIKC_MADS family protein