PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008710.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 260aa MW: 28861.7 Da PI: 7.3849

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008710.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk++Gasnv kll++l ++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ Cse_sc008710.1_g020.1 16 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAKVHKVYGASNVAKLLSDLGATQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLK 103 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 q++++l+++k+e Cse_sc008710.1_g020.1 104 QVQNDLETAKRE 115 *****99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MYAAVKVKEK MSTNSPCAAC KFLRRKCTQE CVFAPYFPPD QPQKFAKVHK VYGASNVAKL 60 LSDLGATQRE DAVNSLAYEA DARLRDPVYG CVGLISILQH RLKQVQNDLE TAKRELASYI 120 GPSAMLPILN QGFVLPYNTQ PEPVLGLAAQ HQQQMLKEQQ QQLIGSNGDR EQPEVLRNYD 180 HQHQRLADLL GFGGGLDAVS ASVQATANEF SHMTTATTNA PCLSLGGSYD NVYQIQHHHH 240 HIQPHHMFFQ QQALAPQSAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-72	LBD family protein