PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008898.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 189aa    MW: 21559.1 Da    PI: 8.7509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008898.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-086989526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           +C+++++ GtCky + CkF H+
  Cse_sc008898.1_g010.1 69 PCKYYLA-GTCKYRSFCKFDHS 89
                           8******.*************7 PP
2zf-CCCH22.42.2e-07109133327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            + +C +++r+  C++G+ CkF+H++
  Cse_sc008898.1_g010.1 109 EQPCFYYLRNRDCRFGAGCKFNHPE 133
                            56899******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MASPKLEKTL NTQSNLNTYK SHASKSNCVS FLGYGICSYY PRCKFYHPTT PKMEIVDEKA  60
QKNGRWNTPC KYYLAGTCKY RSFCKFDHSG PTDLQPQYNS IGLPLRPNEQ PCFYYLRNRD  120
CRFGAGCKFN HPELHDARSL RFTDDGAYGS EIHVQSGNQG NGVSGNYEKN VIFKFGRVNF  180
DGITPETQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-23C3H family protein