PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008898.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 280aa    MW: 31046.6 Da    PI: 7.1435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008898.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-106080425
                           ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                            +C+ff++ G+CkyG++C+F+H
  Cse_sc008898.1_g040.1 60 TPCKFFLA-GFCKYGASCRFSH 80
                           69******.************* PP
2zf-CCCH29.21.6e-09106127627
                            -SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                            C f++r+G+C yG  Ck+ H++
  Cse_sc008898.1_g040.1 106 CAFYMRFGICGYGVACKYDHPE 127
                            ********************96 PP
3zf-CCCH27.45.8e-09234259227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            + + Cr++   G CkyG rCkF H+p
  Cse_sc008898.1_g040.1 234 GKRVCRNYESLGLCKYGHRCKFDHPP 259
                            7899********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MSNLGNNMNM QQSLRSRIMN CLAFITTGTC YFGKFCHFNH PNPEEVVADR QRGISQPTPT  60
PCKFFLAGFC KYGASCRFSH TLTVVPNLRL HFNADGLPKR LGANTCAFYM RFGICGYGVA  120
CKYDHPEPVN QCPHQGYGLY AADDVEDYYP AESREYQAGY QEVTNGGNGN GSQYVQQPEP  180
IYYLAAESRE YQNECHGVTN GGNENQQETQ ARTTVVSKEP CVTLSDAGLP LRPGKRVCRN  240
YESLGLCKYG HRCKFDHPPA LSSNDEGKPV SGSETPSAQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.27e-30C3H family protein