PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008974.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 460aa MW: 49927.1 Da PI: 7.9078

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008974.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.2	8.9e-11	129	153	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+C+F H+ Cse_sc008974.1_g090.1 129 GEKDCAHYMLTRTCKFGDSCRFDHP 153 7889********************9 PP
2	zf-CCCH	32.8	1.2e-10	182	206	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 C+ff++t Ck+G++CkF+H++ Cse_sc008974.1_g090.1 182 VQDCPFFLKTQKCKFGPSCKFNHPK 206 678********************96 PP
3	zf-CCCH	35	2.4e-11	275	301	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Cky ++C+++H++ Cse_sc008974.1_g090.1 275 PGEVDCPFYLKTGSCKYSATCRYNHPE 301 57899********************96 PP
4	zf-CCCH	33.4	7.8e-11	357	379	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG C +G+rCk++H+ Cse_sc008974.1_g090.1 357 LECDYYMKTGACMFGERCKYHHP 379 58********************9 PP
5	zf-CCCH	42	1.5e-13	411	434	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG CkyG++CkF H+p Cse_sc008974.1_g090.1 411 VNCPYYMKTGACKYGATCKFDHPP 434 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MANHLYGYGT SSNPSTKSLI DPYASSSSDP SYYTSSNPLT SSFNYSSMYA NNNKDTVLGS 60 STLWPGPPPP ALDSIYAGFK RPASEALYHQ SLLGTHNTIG QGEAWYSANP LVKRPRFQSS 120 LSVFPQRPGE KDCAHYMLTR TCKFGDSCRF DHPLWVPEGG IPDWKEVPVT DTSEPLPERQ 180 GVQDCPFFLK TQKCKFGPSC KFNHPKDKAA TSQWLPGHNA SHVVCEDASV QKYLGNANGG 240 QIEGITGGTA GSLAPSNPPF TPALLHNSKG LPIRPGEVDC PFYLKTGSCK YSATCRYNHP 300 ERYAMDPPAA IAATSALHMN IGLVNPTPPF LQTLDPRIGQ TTLGLGTSIY PQRPGQLECD 360 YYMKTGACMF GERCKYHHPL DRTAHALSAK EGQQNAVKLT LAGLPRREGA VNCPYYMKTG 420 ACKYGATCKF DHPPPGEVMA AVTSQGASTT TGEEVKEEHP

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MANHLYGYGT SSNPSTKSLI DPYASSSSDP SYYTSSNPLT SSFNYSSMYA NNNKDTVLGS  60
STLWPGPPPP ALDSIYAGFK RPASEALYHQ SLLGTHNTIG QGEAWYSANP LVKRPRFQSS  120
LSVFPQRPGE KDCAHYMLTR TCKFGDSCRF DHPLWVPEGG IPDWKEVPVT DTSEPLPERQ  180
GVQDCPFFLK TQKCKFGPSC KFNHPKDKAA TSQWLPGHNA SHVVCEDASV QKYLGNANGG  240
QIEGITGGTA GSLAPSNPPF TPALLHNSKG LPIRPGEVDC PFYLKTGSCK YSATCRYNHP  300
ERYAMDPPAA IAATSALHMN IGLVNPTPPF LQTLDPRIGQ TTLGLGTSIY PQRPGQLECD  360
YYMKTGACMF GERCKYHHPL DRTAHALSAK EGQQNAVKLT LAGLPRREGA VNCPYYMKTG  420
ACKYGATCKF DHPPPGEVMA AVTSQGASTT TGEEVKEEHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-152	C3H family protein