PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009032.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28887 Da    PI: 10.1622
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009032.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Cse_sc009032.1_g010.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
                           79***********************************************96 PP
2K-box97.12.7e-32811747100
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                            ++ e+++++s++ e+++Lk++ie L+r++Rh+ GedLe+Lsl++Lq++eqqL+++lk+iR+kKn+l++e+i+el kkek lqe+n++L
  Cse_sc009032.1_g010.1  81 TAPENETQASWTLESSRLKAKIEVLERNIRHYGGEDLEPLSLRDLQNVEQQLDTALKRIRTKKNQLMHESISELHKKEKTLQERNNSL 168
                            556778899******************************************************************************* PP

                  K-box  95 rkklee 100
                            +kkl+e
  Cse_sc009032.1_g010.1 169 SKKLKE 174
                            ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVQMKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTH  60
SSMESILERY ERYSYAEKLL TAPENETQAS WTLESSRLKA KIEVLERNIR HYGGEDLEPL  120
SLRDLQNVEQ QLDTALKRIR TKKNQLMHES ISELHKKEKT LQERNNSLSK KLKENEKNSE  180
QQNARVELPQ PPPPPPPPPP QPQPQPYSVP SFATSSRPFI GAAMREEELA RAHHVSTTMM  240
PLWMIRHLNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-88MIKC_MADS family protein