PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009033.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 22814.6 Da PI: 8.7683

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009033.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	19	71	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t+eq++ Le+ F +++++ e + +L+++lg++ rq+ +W+qN+Ra++k+ Cse_sc009033.1_g020.1 19 KRLTEEQVRLLESSFDSCKKLEPELKHQLSRQLGIPPRQIAIWYQNKRARWKN 71 568************************************************95 PP
2	HD-ZIP_I/II	104.7	7.2e-34	18	108	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +rl++eqv+lLE+sF++ +kLepe K++l+r+Lg+ prq+a+W+qn+RAR+k++ lE+dy++L+ +++a e+++L+kev++Lr+e Cse_sc009033.1_g020.1 18 SKRLTEEQVRLLESSFDSCKKLEPELKHQLSRQLGIPPRQIAIWYQNKRARWKNQSLEHDYNMLQLRLEATLFETRQLQKEVDQLRAE 105 58*************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ Cse_sc009033.1_g020.1 106 LNK 108 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MNHSTYHNQK PSQRKHTSKR LTEEQVRLLE SSFDSCKKLE PELKHQLSRQ LGIPPRQIAI 60 WYQNKRARWK NQSLEHDYNM LQLRLEATLF ETRQLQKEVD QLRAELNKVK AEQARYHKYY 120 NNNNNNNNLR SLMDSSFSIC GDQEGGSSSR SLEDDMNNNI YCFGQQVFEV EEMYATASLM 180 GSDLGLFASQ KKLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-27	HD-ZIP family protein