PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009169.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 421aa MW: 48496.7 Da PI: 7.967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009169.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.3	7.6e-27	92	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+laL+ +r++++ ++r+++ k+plW+evs+ m e+g++r+ k+C ek enl k+ykkikeg+ +r ++++++++f+qlea Cse_sc009169.1_g020.1 92 RWPKEETLALLGIRSRLDYKFRETNHKGPLWDEVSRIMfVEHGYKRTGKKCSEKCENLYKYYKKIKEGKAGR--QDKKHYRFFRQLEA 177 8***********************************99**************************97..56667*****85 PP
2	trihelix	45.5	1.9e-14	337	406	2	70
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+ +Li++r++me+r+++ g+ + lW+e+s m g++r++ Ck kw+ +n + k+ ++ Cse_sc009169.1_g020.1 337 WGDDEITQLIQLRNSMETRFEQgGCMEDVLWDEISLTMGCLGYNRNALVCKAKWDHINFLLRTKKRKDNT 406 *******************9569*******************************988877776665 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MEEKYGMIDL ISHYMNGNPP FPTIPQPQPQ PQPQSPHDLH YSMGMLGGGG MSFGSDSTMG 60 IGSAPSGLSC DSGGGGGNGV DKVEIGDCSG ARWPKEETLA LLGIRSRLDY KFRETNHKGP 120 LWDEVSRIMF VEHGYKRTGK KCSEKCENLY KYYKKIKEGK AGRQDKKHYR FFRQLEAIYG 180 ETSTSTSRDL ISQPLVSNNP SSFNFRNCNA TLPQYMDDSD CAEKTINKKE LSKKRWKTSI 240 TDFIETKMNT LMEKQDAWMK KVMNTIDEKE KERISKEQQW RKEEAARLEI ETKFRSNERA 300 WMESRDSAIM AALHKLTENE ASSHEFYNDQ NKIVSGWGDD EITQLIQLRN SMETRFEQGG 360 CMEDVLWDEI SLTMGCLGYN RNALVCKAKW DHINFLLRTK KRKDNTLSSN LYYDRHHNIY 420 H

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MEEKYGMIDL ISHYMNGNPP FPTIPQPQPQ PQPQSPHDLH YSMGMLGGGG MSFGSDSTMG  60
IGSAPSGLSC DSGGGGGNGV DKVEIGDCSG ARWPKEETLA LLGIRSRLDY KFRETNHKGP  120
LWDEVSRIMF VEHGYKRTGK KCSEKCENLY KYYKKIKEGK AGRQDKKHYR FFRQLEAIYG  180
ETSTSTSRDL ISQPLVSNNP SSFNFRNCNA TLPQYMDDSD CAEKTINKKE LSKKRWKTSI  240
TDFIETKMNT LMEKQDAWMK KVMNTIDEKE KERISKEQQW RKEEAARLEI ETKFRSNERA  300
WMESRDSAIM AALHKLTENE ASSHEFYNDQ NKIVSGWGDD EITQLIQLRN SMETRFEQGG  360
CMEDVLWDEI SLTMGCLGYN RNALVCKAKW DHINFLLRTK KRKDNTLSSN LYYDRHHNIY  420
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-88	Trihelix family protein