PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009278.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 597aa MW: 66479.6 Da PI: 5.0614

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009278.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.2	8.2e-27	48	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqe+laLi++r+em+ ++r+++lk+plW+ vs+k+ e gf+rs+k+C+ek+en+ k+++++keg+ + s+ + +++ dql+ Cse_sc009278.1_g030.1 48 RWPKQETLALIRIRSEMDAAFRDSNLKGPLWDNVSRKLLELGFNRSAKKCREKFENVYKYHRRTKEGRTAK-SD--KIYRFSDQLQ 130 8******************************************************************9985.33..3478878776 PP
2	trihelix	101.1	8.9e-32	398	483	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e++aLi++r++++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr se+s+tc+yfdql+a Cse_sc009278.1_g030.1 398 RWPKAEIKALITLRTQLDIKYQENVPKGPLWEEISALMRNIGYNRNAKRCKEKWENINKYYKKLKESNKKR-SENSKTCSYFDQLDA 483 8*******************************************************************8.88899******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MEQQVAPPAT TVNNSGDGAA TLQLQPPHIN GGAAEMGDDG DRNSGGNRWP KQETLALIRI 60 RSEMDAAFRD SNLKGPLWDN VSRKLLELGF NRSAKKCREK FENVYKYHRR TKEGRTAKSD 120 KIYRFSDQLQ ALESNLSGAF APTPISAATP ASVLVAMSNN VNATGSDQNN VSPISVAAPA 180 VMAVPPPPVM NHKRTFPFSQ PNMSGSTNSA SSSDTDDEPP RKKKKWEDFF GKLMKEVIQK 240 QEELQMRFLD TLERREKDRV AREEAWRAQE ILKMNQEYEM LVKERSVVAA KDAAIITFLQ 300 KLTEKNSDGV KLITNEAKAK LTELMAPPTP LPSVSTIQVL PQQQIQQTPP PPPPPPTKLT 360 PRPPQPEVTP AALLPPVVQN LGSGGSAGEN MLSPSPSRWP KAEIKALITL RTQLDIKYQE 420 NVPKGPLWEE ISALMRNIGY NRNAKRCKEK WENINKYYKK LKESNKKRSE NSKTCSYFDQ 480 LDAIYREKSN AIIVAQPENQ WPPATVVQEN TPAVQQPMPT TDTPGFGVKP EQQWRLPTVV 540 KETPQVDDQG SDNVDDYDDI DDDGDDDDDD DDDNEDKDDE SGGYEIVANK MSSMAAI

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MEQQVAPPAT TVNNSGDGAA TLQLQPPHIN GGAAEMGDDG DRNSGGNRWP KQETLALIRI  60
RSEMDAAFRD SNLKGPLWDN VSRKLLELGF NRSAKKCREK FENVYKYHRR TKEGRTAKSD  120
KIYRFSDQLQ ALESNLSGAF APTPISAATP ASVLVAMSNN VNATGSDQNN VSPISVAAPA  180
VMAVPPPPVM NHKRTFPFSQ PNMSGSTNSA SSSDTDDEPP RKKKKWEDFF GKLMKEVIQK  240
QEELQMRFLD TLERREKDRV AREEAWRAQE ILKMNQEYEM LVKERSVVAA KDAAIITFLQ  300
KLTEKNSDGV KLITNEAKAK LTELMAPPTP LPSVSTIQVL PQQQIQQTPP PPPPPPTKLT  360
PRPPQPEVTP AALLPPVVQN LGSGGSAGEN MLSPSPSRWP KAEIKALITL RTQLDIKYQE  420
NVPKGPLWEE ISALMRNIGY NRNAKRCKEK WENINKYYKK LKESNKKRSE NSKTCSYFDQ  480
LDAIYREKSN AIIVAQPENQ WPPATVVQEN TPAVQQPMPT TDTPGFGVKP EQQWRLPTVV  540
KETPQVDDQG SDNVDDYDDI DDDGDDDDDD DDDNEDKDDE SGGYEIVANK MSSMAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	7e-37	Trihelix family protein