PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009388.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17218.1 Da    PI: 10.1728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009388.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.6e-2753103151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                            krie+k+ rqv+fskRrng++KKA+EL  LCd++va++ifs++gkl+e+s+
  Cse_sc009388.1_g050.1  53 KRIEDKTSRQVSFSKRRNGLMKKAYELAELCDVDVALLIFSERGKLQEFST 103
                            79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MWHSVNTCLL VPSIYTYTVH LRNPNTVDQV LLFPLEKKKT KSAGMGRGKV ELKRIEDKTS  60
RQVSFSKRRN GLMKKAYELA ELCDVDVALL IFSERGKLQE FSTGESSTKI TSVVTDLQND  120
YFPISMVIRF EALSKKIPSF GSQVLSVLGH KF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.34e-27MIKC_MADS family protein