PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009404.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 353aa MW: 38518.5 Da PI: 9.9328

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009404.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1e-16	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ v +L+ea+++++ +r+klk+++We+v+k++ ++++ ++++qCk+k+e+++kry+ + ++ +s++p+f++ Cse_sc009404.1_g020.1 42 EWSEGAVSTLLEAYESKWILRNRAKLKGHDWEDVAKYVssraNSTKLPKTQTQCKNKIESMKKRYRSESASGD------VSSWPLFQR 123 5***********************************999889999***************9887766......568**99 PP trihelix 85 le 86 l+ Cse_sc009404.1_g020.1 124 LD 125 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDKQQQQPND TPSPKNNPVS ASSGAGLLAS ASGGGDRLKR DEWSEGAVST LLEAYESKWI 60 LRNRAKLKGH DWEDVAKYVS SRANSTKLPK TQTQCKNKIE SMKKRYRSES ASGDVSSWPL 120 FQRLDLLLRG TGGASGGSQV VTVASACGGG DVLPVVSAVP VSTSMMMVQS SSSVPVIVQA 180 PEPAPAPVLV PGPVLSPGQQ VTAQNSVDSN GVDRDNKQED VVVTKVPDNQ PPDKMDIESD 240 CSTPALYSNE KEKLSSKNHR TKMPDNRKRR RKRENWDVAE SIRWLAKVMV KSEQAKAETM 300 RELEKMRADA DIRRSEIDLK RTEIIAHTQL EIAKLFAASL GKSVDPSLRI GRS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDKQQQQPND TPSPKNNPVS ASSGAGLLAS ASGGGDRLKR DEWSEGAVST LLEAYESKWI  60
LRNRAKLKGH DWEDVAKYVS SRANSTKLPK TQTQCKNKIE SMKKRYRSES ASGDVSSWPL  120
FQRLDLLLRG TGGASGGSQV VTVASACGGG DVLPVVSAVP VSTSMMMVQS SSSVPVIVQA  180
PEPAPAPVLV PGPVLSPGQQ VTAQNSVDSN GVDRDNKQED VVVTKVPDNQ PPDKMDIESD  240
CSTPALYSNE KEKLSSKNHR TKMPDNRKRR RKRENWDVAE SIRWLAKVMV KSEQAKAETM  300
RELEKMRADA DIRRSEIDLK RTEIIAHTQL EIAKLFAASL GKSVDPSLRI GRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	271	RKRRR
2	267	273	RKRRRKR
3	267	274	RKRRRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-54	Trihelix family protein