PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009860.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 798aa MW: 89685.7 Da PI: 6.9593

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009860.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.5	1.3e-13	607	650	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +++++e ++++ +pi++AA + gv+ ++LKr CR++GI+ WP Cse_sc009860.1_g020.1 607 DSLRMEAVQQHVGKPINQAAESFGVSRSTLKRFCRENGIMSWPK 650 6799***************************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MDHFARSHIV DSEERDTSLC SGSPSVLSKD QKTEFLSIKL SLEQPTVSLS GELRYLTPLW 60 VSGNEEPWDE LYRAENNVPH DQKIKEKIRA ALKLLTLREE RVLVQFWSPR VVGKHQLLTT 120 IDQPFGLGII EEGLYSYRRD SERNVFLVDK DHAEEDISPP ARVFRRGLPE WTYDLQNYLP 180 KDFPQQECAI RCNLHGYLAL PVFDSTTNLC VGVIELLMSS KTTDYAFEVQ QVHKALKKQS 240 LKSPQVFDFA TPNTTDYAFE VQQVHKALKK QSLKSPQVFD FATPNVSNEQ RQIELDILCG 300 ILKTVCDSHS LPLAQAWAVS PSSSFVSHDN IIDETCSSFD TKCIGKVCMS TNGLPFHVQD 360 MGMWPFRETC KEHHLDKSRS FVGKALLARG SKYCQDVTEL TEEEYPFVLK AHNYKIASCF 420 AIFLHSLSGN DEYVLEFFLP LYLKDGSYVP YLVQTLKQKV EDASGFELGE IPSPTEVTGP 480 PKDASFLSSS IKPQYTQISA VTAANTLEYG MDSSYSEPVL ANVAKTDSAD PVLANVAKTD 540 SADVQSQCSS RENYPNDMSD NINMVGSSEI VNATSYSIVT NQKMSDTTTN AGVKSTTLKR 600 GRKRKIDSLR MEAVQQHVGK PINQAAESFG VSRSTLKRFC RENGIMSWPK PSQSTKCSHA 660 TDLKISQVVS QQSSQRSSSG WFARRHVVLF AVRVKRLSSL GRHSYLHSKS DSIYQEAQVM 720 VKATFKGDMI KFRFPISSGL SDLKNEVAQR FNLKGKKLSI RYKDKEDDLI LITCDDDLHT 780 LPEFLASNTT VKLLVACE

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MDHFARSHIV DSEERDTSLC SGSPSVLSKD QKTEFLSIKL SLEQPTVSLS GELRYLTPLW  60
VSGNEEPWDE LYRAENNVPH DQKIKEKIRA ALKLLTLREE RVLVQFWSPR VVGKHQLLTT  120
IDQPFGLGII EEGLYSYRRD SERNVFLVDK DHAEEDISPP ARVFRRGLPE WTYDLQNYLP  180
KDFPQQECAI RCNLHGYLAL PVFDSTTNLC VGVIELLMSS KTTDYAFEVQ QVHKALKKQS  240
LKSPQVFDFA TPNTTDYAFE VQQVHKALKK QSLKSPQVFD FATPNVSNEQ RQIELDILCG  300
ILKTVCDSHS LPLAQAWAVS PSSSFVSHDN IIDETCSSFD TKCIGKVCMS TNGLPFHVQD  360
MGMWPFRETC KEHHLDKSRS FVGKALLARG SKYCQDVTEL TEEEYPFVLK AHNYKIASCF  420
AIFLHSLSGN DEYVLEFFLP LYLKDGSYVP YLVQTLKQKV EDASGFELGE IPSPTEVTGP  480
PKDASFLSSS IKPQYTQISA VTAANTLEYG MDSSYSEPVL ANVAKTDSAD PVLANVAKTD  540
SADVQSQCSS RENYPNDMSD NINMVGSSEI VNATSYSIVT NQKMSDTTTN AGVKSTTLKR  600
GRKRKIDSLR MEAVQQHVGK PINQAAESFG VSRSTLKRFC RENGIMSWPK PSQSTKCSHA  660
TDLKISQVVS QQSSQRSSSG WFARRHVVLF AVRVKRLSSL GRHSYLHSKS DSIYQEAQVM  720
VKATFKGDMI KFRFPISSGL SDLKNEVAQR FNLKGKKLSI RYKDKEDDLI LITCDDDLHT  780
LPEFLASNTT VKLLVACE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-81	Nin-like family protein