PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc010185.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family BBR-BPC
Protein Properties Length: 322aa    MW: 35874.8 Da    PI: 10.3377
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc010185.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind308.42.5e-9412971300
              GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav..aerd..............maflqrdkal 67 
                            mdddg + rn+gyyep  s+ke+lglqlms +   rd+k+    re+ + + ++++++  +                 m++ +rd ++
  Cse_sc010185.1_g020.1   1 MDDDGLNIRNWGYYEPP-SFKEHLGLQLMSPMVdHRDTKPflspREHPI-MVNPNGVMpyH--HnhlrnsvvnesplpMQY-MRDGWI 83 
                            9****988********9.************88868****9999777666.77777766422..224677889999999999.999999 PP

              GAGA_bind  68 aernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkk 150
                            +   +++++  n+   l++ +              sg++s+++++ql+        +edsa+             +    +  + k+ 
  Cse_sc010185.1_g020.1  84 QRERHHHMHPGNNSYPLIHDS--------------SGSQSMHMMHQLDSsnnhgMMMEDSAASGGG------DSGSGGSGSGVQLKR- 150
                            995555555555555444422..............3333333333322200011333333333111......112222333333333. PP

              GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                            ++++  ++ k+++akk++k s+ +k++ ++++   rsk+ k+s+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCttt
  Cse_sc010185.1_g020.1 151 RSGSAVANSKQPRAKKPRKASSIPKENGNPSG---RSKTVKRSMDVVINGIDMDISGIPIPVCSCTGVQQQCYRWGSGGWQSACCTTT 235
                            34677888888999999998888888888777...79*************************************************** PP

              GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                            iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+e y+++n++DL+ hWAkHGtnkfvti
  Cse_sc010185.1_g020.1 236 ISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLASESYNFANAIDLRLHWAKHGTNKFVTI 297
                            *************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MDDDGLNIRN WGYYEPPSFK EHLGLQLMSP MVDHRDTKPF LSPREHPIMV NPNGVMPYHH  60
NHLRNSVVNE SPLPMQYMRD GWIQRERHHH MHPGNNSYPL IHDSSGSQSM HMMHQLDSSN  120
NHGMMMEDSA ASGGGDSGSG GSGSGVQLKR RSGSAVANSK QPRAKKPRKA SSIPKENGNP  180
SGRSKTVKRS MDVVINGIDM DISGIPIPVC SCTGVQQQCY RWGSGGWQSA CCTTTISMYP  240
LPMSTKRRGA RIAGRKMSQG AFKKVLEKLA SESYNFANAI DLRLHWAKHG TNKFVTISLF  300
KLIRHLAKPF ENMVTAPTRD QR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.15e-84BBR-BPC family protein