PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010188.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 514aa MW: 57751.2 Da PI: 7.087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010188.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.5e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++sFs+ +L H+r+H Cse_sc010188.1_g040.1 10 HVCRYCTQSFSNGKQLGGHMRSH 32 79********************9 PP
2	zf-C2H2	19.2	3.2e-06	222	242	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs++ L++H r+H Cse_sc010188.1_g040.1 222 CQECGKEFSSSKALVSHKRSH 242 *******************99 PP
3	zf-C2H2	11.1	0.0013	457	479	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F + L +H r H Cse_sc010188.1_g040.1 457 HVCVICYKKFGSAQALGSHKRIH 479 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MKQDQEPKLH VCRYCTQSFS NGKQLGGHMR SHLALIAASR KKGVHGIHQF VYNDHDHVIK 60 KHGVHGFAYG GAKMVNNSQL FDQDYDQDFV NGEKGPGFAY GYDKMVQKSQ HFDQGYDHDY 120 GANGRIKGED FVNGEKGLGF AYGYDKMVQK SQHFDQDYDQ GYGEFDDGGG YEMVKKSQLK 180 MEVDQDYDQD DGADNVYGLR ENPKRSWRVS SSNSVKDFGI FCQECGKEFS SSKALVSHKR 240 SHSRKESNKD TICEKCGRGF DSLKALYGHM RCHSAKRSQV SDALDDHVDV DGGVANPIRK 300 KRSYTRYKSP KHDNVGTGLS FSSCNDDYEV EEGAICLMMI SRGVRSLDEV KLVISRQADF 360 ALSDCEYSRT SVKTAEFEVS VDESMEYGSF VNESELGLKE DLTVGYGSGQ LKTNRVGSAM 420 AKCKSTKIPR SCAQDFVDRD GTDSGIFLEP KRRYKDHVCV ICYKKFGSAQ ALGSHKRIHN 480 KAENKSVGVN SSDVEFKLTW VHSEIEWDPF AVVN

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MKQDQEPKLH VCRYCTQSFS NGKQLGGHMR SHLALIAASR KKGVHGIHQF VYNDHDHVIK  60
KHGVHGFAYG GAKMVNNSQL FDQDYDQDFV NGEKGPGFAY GYDKMVQKSQ HFDQGYDHDY  120
GANGRIKGED FVNGEKGLGF AYGYDKMVQK SQHFDQDYDQ GYGEFDDGGG YEMVKKSQLK  180
MEVDQDYDQD DGADNVYGLR ENPKRSWRVS SSNSVKDFGI FCQECGKEFS SSKALVSHKR  240
SHSRKESNKD TICEKCGRGF DSLKALYGHM RCHSAKRSQV SDALDDHVDV DGGVANPIRK  300
KRSYTRYKSP KHDNVGTGLS FSSCNDDYEV EEGAICLMMI SRGVRSLDEV KLVISRQADF  360
ALSDCEYSRT SVKTAEFEVS VDESMEYGSF VNESELGLKE DLTVGYGSGQ LKTNRVGSAM  420
AKCKSTKIPR SCAQDFVDRD GTDSGIFLEP KRRYKDHVCV ICYKKFGSAQ ALGSHKRIHN  480
KAENKSVGVN SSDVEFKLTW VHSEIEWDPF AVVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	2e-11	C2H2 family protein