PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010200.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 275aa MW: 29900.6 Da PI: 5.2838

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010200.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41	3.1e-13	209	233	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Cse_sc010200.1_g030.1 209 CSGCRNLLLYPVGATSVCCAVCNAV 233 ************************9 PP
2	zf-LSD1	45.3	1.5e-14	248	272	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ Cse_sc010200.1_g030.1 248 CGGCHTLLMYIRGATSVQCSCCHTI 272 ***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MFFKEGCFDD DEDERDGLCH LVWLMDVTCP SHPSSEILLR SKCIFVGPLG FASTDDSSPE 60 GRVLSSHPSA AFRSKSRQPK RCFELLWVPS GIGLEHLSKW ILSILRYPQT AMESRRLTSA 120 DLLWNTDNTY FSSSKANVSK RSDDASFDDD DDFEADFQGF KDHHDDVTNN KPSFSFSSKP 180 SSSSSFGSIS IPPAPVTTPA NGSQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG 240 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TINLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-34	LSD family protein