PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010389.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 361aa MW: 40825.9 Da PI: 6.5155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010389.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.4e-13	290	335	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k + a++L +AveYIk+Lq Cse_sc010389.1_g020.1 290 SIAERVRRTRISERIKRLQELFPDM----DKQTNTADMLDMAVEYIKDLQ 335 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MYGVNNSSDA ISRDMNSILY SSTFKHPADT EFAKIKQLIS LDNNNSYENP THPQHQENSE 60 NPPLVSYRST PSSFFSNLLN ENENDAFQDH EPEEIYFMDQ QHKKKSESDS YNMKREKQEM 120 GTKNIEVLGY GYSKQSDLDC GSSYRGMDST SSNLVRQSSS PAGFLSSLTG ENAFAKDLRN 180 GSSSSTFNSH ISFSLGSSSS SSRFLPQIAE NENELNDSTF HSLKRSRDGS LKMSQNGETV 240 NHTPNLVHHM SLPKTSSEMA AVDNFLHFQQ DSSVPWKTRA KRGFATHPRS IAERVRRTRI 300 SERIKRLQEL FPDMDKQTNT ADMLDMAVEY IKDLQNELQT LNDARARCKC SKEQLQSGST 360 M

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MYGVNNSSDA ISRDMNSILY SSTFKHPADT EFAKIKQLIS LDNNNSYENP THPQHQENSE  60
NPPLVSYRST PSSFFSNLLN ENENDAFQDH EPEEIYFMDQ QHKKKSESDS YNMKREKQEM  120
GTKNIEVLGY GYSKQSDLDC GSSYRGMDST SSNLVRQSSS PAGFLSSLTG ENAFAKDLRN  180
GSSSSTFNSH ISFSLGSSSS SSRFLPQIAE NENELNDSTF HSLKRSRDGS LKMSQNGETV  240
NHTPNLVHHM SLPKTSSEMA AVDNFLHFQQ DSSVPWKTRA KRGFATHPRS IAERVRRTRI  300
SERIKRLQEL FPDMDKQTNT ADMLDMAVEY IKDLQNELQT LNDARARCKC SKEQLQSGST  360
M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-52	bHLH family protein