PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010431.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 478aa MW: 53255.2 Da PI: 6.8321

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010431.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6e-17	141	190	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cse_sc010431.1_g030.1 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190 78*****************......55**********************997 PP
2	AP2	43	1.1e-13	233	283	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Cse_sc010431.1_g030.1 233 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 283 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MWDLNGSPDR RTDDLDEGPV EEYDTKGKQI GQEISLSSSS SSLMIIEDNN NNEDDDNDSS 60 RLFGFSMTHS NNQPVPVTHQ FFPSFNDESS SQVGSTRPTD FPTANWVGVR FSHGGGVGDG 120 KVTNVAQPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA 180 YDRAAIKFRG VEADINFTLE DYQDDLKQMT NLSKEEFVHV LRRQSTGFPR GSSKYRGVTL 240 HKCGRWEARM GQFLGKKYVY LGLFDTEVEA ARAYDKAAIK CNGKDAITNF DSTIYEDELN 300 SVAECSNIDN SNNSSTDHNL DLSLGGSSSS NKQQNIQFGE NPQIPSTHHS NSIQFGFSRP 360 PALGSGLFDG IRRNETETFQ LLNQTHHQSP NGMFMGNNEG HGYGHFIRTT NPTMFHTFNP 420 STINSMSHQV SQPTMQFTSS TSTAYLGGNN PSLHQMYANS AAASSGFPHQ RFHVRQPP

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MWDLNGSPDR RTDDLDEGPV EEYDTKGKQI GQEISLSSSS SSLMIIEDNN NNEDDDNDSS  60
RLFGFSMTHS NNQPVPVTHQ FFPSFNDESS SQVGSTRPTD FPTANWVGVR FSHGGGVGDG  120
KVTNVAQPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG VEADINFTLE DYQDDLKQMT NLSKEEFVHV LRRQSTGFPR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKYVY LGLFDTEVEA ARAYDKAAIK CNGKDAITNF DSTIYEDELN  300
SVAECSNIDN SNNSSTDHNL DLSLGGSSSS NKQQNIQFGE NPQIPSTHHS NSIQFGFSRP  360
PALGSGLFDG IRRNETETFQ LLNQTHHQSP NGMFMGNNEG HGYGHFIRTT NPTMFHTFNP  420
STINSMSHQV SQPTMQFTSS TSTAYLGGNN PSLHQMYANS AAASSGFPHQ RFHVRQPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-111	AP2 family protein