PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc010557.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22958.7 Da    PI: 10.1306
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc010557.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.7e-211863449
                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           e +sn  vtfskRr g++KKA+EL++LC+ae+a+++fs+  k++ +
  Cse_sc010557.1_g020.1 18 EKESNLMVTFSKRRSGLFKKASELCILCGAEIAIVVFSPGKKVFSF 63
                           788999*********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MTPKKSKGRQ KIQMMKMEKE SNLMVTFSKR RSGLFKKASE LCILCGAEIA IVVFSPGKKV  60
FSFGHPSVET IVDRFFTHNP PPNSSTSQFV EAHRNANIHE LNRQLAYDIS QLEDQKIKGE  120
QFSMMRKASQ DNHWWEAPIE SLGLGELERL NIIMGLLKQN IEEQKKRHLV EAANPMSIVP  180
ISSPMGISMT PHGLVLGYGH LSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-57M-type_MADS family protein