PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010808.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 148aa MW: 15455.2 Da PI: 7.7286

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010808.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.4	5.7e-14	31	55	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C+++ Cse_sc010808.1_g030.1 31 CSGCRNLLLYPIGATSVCCAVCNAI 55 ***********************97 PP
2	zf-LSD1	44.6	2.4e-14	70	94	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA sV+C++C+t+ Cse_sc010808.1_g030.1 70 CGGCHTLLMYIRGAASVQCSCCHTI 94 ***********************97 PP
3	zf-LSD1	47.4	3.1e-15	108	132	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+GA+sV+Ca+C+++ Cse_sc010808.1_g030.1 108 CGNCRMLLMYPYGARSVKCAVCQFI 132 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence
MPVPLAPYPT PPVPFTPPAT PPTGSESQLV CSGCRNLLLY PIGATSVCCA VCNAITAVPP 60 PGTEMAQLVC GGCHTLLMYI RGAASVQCSC CHTINLALEG NQVAHVNCGN CRMLLMYPYG 120 ARSVKCAVCQ FITSIGVPTS NIEQKLVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-74	LSD family protein