PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010916.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 218aa MW: 22957.6 Da PI: 8.3892

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010916.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.2	4.2e-11	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+C+lC++V Cse_sc010916.1_g020.1 66 CSGCRSILVYPKGASNVCCTLCNAV 90 ************************9 PP
2	zf-LSD1	32.9	1.1e-10	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ + GA+ V+C++C+tV Cse_sc010916.1_g020.1 105 CGGCRTLLMHTCGATKVKCTCCHTV 129 ************************9 PP
3	zf-LSD1	42.5	1.1e-13	143	165	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+C+t+L+YP+GApsV+Ca+C Cse_sc010916.1_g020.1 143 CGNCGTMLMYPYGAPSVKCAVCL 165 **********************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MAIGRWLPKK TPIQSAPGRE ASTSSLAWFT SFTENSHLLK QSIPISLQIS STGPDILKKM 60 QSQIVCSGCR SILVYPKGAS NVCCTLCNAV TSAPPPGMEI TQLICGGCRT LLMHTCGATK 120 VKCTCCHTVN LAPVANQIAH VNCGNCGTML MYPYGAPSVK CAVCLYITNV TSNGRVPAPV 180 QPNGTATSTL IPSMSTETPH SYNQTVDDES GKLLSSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	8e-54	LSD family protein