PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011027.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 588aa MW: 64658.8 Da PI: 7.0479

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011027.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	260	280	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd+C +aHg Cse_sc011027.1_g010.1 260 PCPEFRK-GSCVKGDTCEYAHG 280 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MCKGSKSKFL KMEGEKFHEN KNGFFLKSSV LLELAATDDV AGFVSEVEGN GVGLDDVSFW 60 YGRRNGFKGK MGFEERTPLM IAALYGSVHV LKYIIGSKKA DVNKCSDSDG ATALHCAAAG 120 GAVSAVETVR VLIEACADLD VTDDNGNKPV DLIARGVKGN KRKVLEMLLS GFSVEETEIF 180 SVSSTEETDV VAAKKEYPVD VSMPDINEGV YGTDEFRMYM FKVKPCSRAY SHDWTECPFV 240 HPGENARRRD PRKHQYTCVP CPEFRKGSCV KGDTCEYAHG VFESWLHPAQ YRTRLCKDET 300 GCARKVCFFA HKVDELRPLY ASTGSAVPSP KSGPVEMGSM SPLGLGSMGS TPPMSPSIAP 360 VNNNMWQNKF VHVTPPALQL PGSRLKTSLN ARDLDLELEM LQRQQMIDDL SSNLYNNSPR 420 FGEMTPTNLE DVYGSPSRQQ MRQNSNQLRS IYPSSPGRKS SSFGFDSSAA VAQAVMNSRS 480 GSFAKQRSQS FIDRSPGNSM RLGSMTQSPT YSEWGSPDGK LDWGFNSEDA SKLRKSASFG 540 YRGGNGGSPV KANHESQSPW DGAGLYSSSE KMPQWVEQMY IEQEQLMA

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MCKGSKSKFL KMEGEKFHEN KNGFFLKSSV LLELAATDDV AGFVSEVEGN GVGLDDVSFW  60
YGRRNGFKGK MGFEERTPLM IAALYGSVHV LKYIIGSKKA DVNKCSDSDG ATALHCAAAG  120
GAVSAVETVR VLIEACADLD VTDDNGNKPV DLIARGVKGN KRKVLEMLLS GFSVEETEIF  180
SVSSTEETDV VAAKKEYPVD VSMPDINEGV YGTDEFRMYM FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKHQYTCVP CPEFRKGSCV KGDTCEYAHG VFESWLHPAQ YRTRLCKDET  300
GCARKVCFFA HKVDELRPLY ASTGSAVPSP KSGPVEMGSM SPLGLGSMGS TPPMSPSIAP  360
VNNNMWQNKF VHVTPPALQL PGSRLKTSLN ARDLDLELEM LQRQQMIDDL SSNLYNNSPR  420
FGEMTPTNLE DVYGSPSRQQ MRQNSNQLRS IYPSSPGRKS SSFGFDSSAA VAQAVMNSRS  480
GSFAKQRSQS FIDRSPGNSM RLGSMTQSPT YSEWGSPDGK LDWGFNSEDA SKLRKSASFG  540
YRGGNGGSPV KANHESQSPW DGAGLYSSSE KMPQWVEQMY IEQEQLMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-175	C3H family protein