PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011078.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 363aa MW: 41489.1 Da PI: 5.1718

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011078.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	21	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++ + +L+++ ++ +l+rg+l++++W++v++++ ++ rs +qCk++++ l+k+yk +k++ + +s++p+f+ Cse_sc011078.1_g020.1 21 CWTEDATSTLVDVWGRRYLELNRGNLRQKDWQDVADAVnalhgLTKKTVRSDVQCKNRIDTLKKKYKLEKARVS------VSNWPFFS 102 8***********************************99999999999***************999888......479*** PP trihelix 84 qle 86 +l+ Cse_sc011078.1_g020.1 103 RLD 105 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MNNNNNNLAT PSRPIPFRED CWTEDATSTL VDVWGRRYLE LNRGNLRQKD WQDVADAVNA 60 LHGLTKKTVR SDVQCKNRID TLKKKYKLEK ARVSVSNWPF FSRLDVLIGP AVAKKSPQLK 120 TTPLAVQYPV LPQKRAAAPV DESSYFRRNY SAVAAAAAAA EEEEEASEEE EEEEELGTSD 180 GEDADEEKNV EGVAVGVKGG GDLDSMKRLA NAIERFGEIY ERVEGEKQKQ MIELEKQRMQ 240 FTKDLEVQRM QLFMDTQVQL EKIKQAKRTV SDDDDVYIRC SGIQKDKPYM LLRCDVKSND 300 ELLCFRDGRF PGWNWTGFCL DLLGGRYRVI KDRVVLDMDR VVNPDRAVWV LLKTFVCPVV 360 VPR

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MNNNNNNLAT PSRPIPFRED CWTEDATSTL VDVWGRRYLE LNRGNLRQKD WQDVADAVNA  60
LHGLTKKTVR SDVQCKNRID TLKKKYKLEK ARVSVSNWPF FSRLDVLIGP AVAKKSPQLK  120
TTPLAVQYPV LPQKRAAAPV DESSYFRRNY SAVAAAAAAA EEEEEASEEE EEEEELGTSD  180
GEDADEEKNV EGVAVGVKGG GDLDSMKRLA NAIERFGEIY ERVEGEKQKQ MIELEKQRMQ  240
FTKDLEVQRM QLFMDTQVQL EKIKQAKRTV SDDDDVYIRC SGIQKDKPYM LLRCDVKSND  300
ELLCFRDGRF PGWNWTGFCL DLLGGRYRVI KDRVVLDMDR VVNPDRAVWV LLKTFVCPVV  360
VPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	4e-51	Trihelix family protein