PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011206.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 536aa MW: 59681.3 Da PI: 9.1893

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011206.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc011206.1_g020.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	15.5	4.9e-05	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Cse_sc011206.1_g020.1 151 WKCDKCSKKYAVQSDWKAHQKTC 173 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MLPEMMGVFL QEKKVKKNKF KSLKTTSKAK IQALYQLHCR RLLLKRKETY PELQVDPTAD 60 VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSTE MKKRVYVCPE 120 PSCVHHNPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC 180 DCGTIFSRRD SFITHRAFCD ALAEENNKMS QEVLQSQHMN DQLMSSKLLD SENNGLMGLP 240 NFNNYEPQNS VKFLPQELAP MSFKPSNMSA GMFSSSSGTL FGNPKVGSSS SSGLQLSSSN 300 GSAPYGCFQQ DNKDGGLLAA HMSATALLQK AAQMGATASN GINSPMMQKS FITSMAGPDH 360 LNSPRPMPTS PYGLQRVNPY DNYQGSNTQT TIEGINIISE GYNPFEKPSP HEVFGSGHGR 420 EPNPVTNDTG SYSQTLTGGD QINVFAKNVE DHVDIGDDNT NLIDGRSNSS VWRNAKKFGN 480 DTLTVDFLGV GGTRPLNIQE QQQRFSGFEA TSHVMNPFHQ LVHGESSTHE KPIWGE

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MLPEMMGVFL QEKKVKKNKF KSLKTTSKAK IQALYQLHCR RLLLKRKETY PELQVDPTAD  60
VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSTE MKKRVYVCPE  120
PSCVHHNPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC  180
DCGTIFSRRD SFITHRAFCD ALAEENNKMS QEVLQSQHMN DQLMSSKLLD SENNGLMGLP  240
NFNNYEPQNS VKFLPQELAP MSFKPSNMSA GMFSSSSGTL FGNPKVGSSS SSGLQLSSSN  300
GSAPYGCFQQ DNKDGGLLAA HMSATALLQK AAQMGATASN GINSPMMQKS FITSMAGPDH  360
LNSPRPMPTS PYGLQRVNPY DNYQGSNTQT TIEGINIISE GYNPFEKPSP HEVFGSGHGR  420
EPNPVTNDTG SYSQTLTGGD QINVFAKNVE DHVDIGDDNT NLIDGRSNSS VWRNAKKFGN  480
DTLTVDFLGV GGTRPLNIQE QQQRFSGFEA TSHVMNPFHQ LVHGESSTHE KPIWGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-90	C2H2 family protein