PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011252.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 782aa MW: 88528.5 Da PI: 8.3776

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011252.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	26.4	1.3e-08	512	553	3	44
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +++++e+++k+ +pi +AAk+Lgv+ ++LK C +++ W Cse_sc011252.1_g030.1 512 DSLTVEEVNKHVGKPIDEAAKSLGVSRSILKHFCQDNNMTSW 553 689********************************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MGSFSLLQSF KSSDEGKILN FDAVPDTLTT NDKSELPFSG ESRYLTRLCV FKNEEQLSQS 60 ESAQPTGFEL RDDNINPHKK IIQDKIIAVL KLLTFREQRV IVQFWSPADV VGKHQVLTTM 120 DQPFGLGEIR EQLTSYRKES QHNLYVVDND HEEEELSPPA RVFKRRVPEW TLDVAYYSPK 180 QFPQKESAFR HDLHGYVALP VVDLFTSSCV GVLEILTFSK YISYAYEIQQ VQSALKTANL 240 ITTHTFDGPT IHVRNALRQN ELEKIYKVLK FVCDTHQLPL AQTWAASPIT TFASHDQILK 300 KSCSSFHTRC LGKVCMSTNA LPYYVQDLRL WSFRKACKEQ HLDKSCGFVG RALLSHGSCF 360 CEDVTKLSKE EYPLVHYALM SGLSSCLAIF LHSIESNNDY ALEFFLPLNI EDGRHVQNLV 420 HTLKHTIEIA SGFELGDNVQ VFGPSREASS VFSNTDPQSN DVIRDDVDVV GAGNDENSIS 480 NHDVSMQIAS NTVTGAREES NRLKRGIKRK IDSLTVEEVN KHVGKPIDEA AKSLGVSRSI 540 LKHFCQDNNM TSWTLPKHKK KTASTDSKLS RISGSKQNLQ QPSNVRFGLF GAAILLVRIK 600 RWSCASKRHV FSGNWWSCGK HGHLSFKSDS IYQVARLMVS LQRWKNKKST RHAMQKRDHL 660 ESTEKTLNKL NVDRMLPDSN LFFASPKQIK SNEVSDTRKV TVKATFKDDI IKVQIPISSR 720 LFELQNEVAH RTNLKSAGFR LKYKDEDDDL ILLACDADLQ NLLGESSTSN NTTVKLIIQA 780 ND

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MGSFSLLQSF KSSDEGKILN FDAVPDTLTT NDKSELPFSG ESRYLTRLCV FKNEEQLSQS  60
ESAQPTGFEL RDDNINPHKK IIQDKIIAVL KLLTFREQRV IVQFWSPADV VGKHQVLTTM  120
DQPFGLGEIR EQLTSYRKES QHNLYVVDND HEEEELSPPA RVFKRRVPEW TLDVAYYSPK  180
QFPQKESAFR HDLHGYVALP VVDLFTSSCV GVLEILTFSK YISYAYEIQQ VQSALKTANL  240
ITTHTFDGPT IHVRNALRQN ELEKIYKVLK FVCDTHQLPL AQTWAASPIT TFASHDQILK  300
KSCSSFHTRC LGKVCMSTNA LPYYVQDLRL WSFRKACKEQ HLDKSCGFVG RALLSHGSCF  360
CEDVTKLSKE EYPLVHYALM SGLSSCLAIF LHSIESNNDY ALEFFLPLNI EDGRHVQNLV  420
HTLKHTIEIA SGFELGDNVQ VFGPSREASS VFSNTDPQSN DVIRDDVDVV GAGNDENSIS  480
NHDVSMQIAS NTVTGAREES NRLKRGIKRK IDSLTVEEVN KHVGKPIDEA AKSLGVSRSI  540
LKHFCQDNNM TSWTLPKHKK KTASTDSKLS RISGSKQNLQ QPSNVRFGLF GAAILLVRIK  600
RWSCASKRHV FSGNWWSCGK HGHLSFKSDS IYQVARLMVS LQRWKNKKST RHAMQKRDHL  660
ESTEKTLNKL NVDRMLPDSN LFFASPKQIK SNEVSDTRKV TVKATFKDDI IKVQIPISSR  720
LFELQNEVAH RTNLKSAGFR LKYKDEDDDL ILLACDADLQ NLLGESSTSN NTTVKLIIQA  780
ND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-88	Nin-like family protein