PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011495.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 706aa MW: 82043.5 Da PI: 8.4876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011495.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.1	1.2e-07	28	108	7	89
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 A+++GF +++ ksk+ g ++ +f Cs++g++++e + ++ +r++++++ +C +l k k + w + HnH++ Cse_sc011495.1_g010.1 28 AESIGFVIVIGKSKTD--RGYKYSIEFLCSRHGTSSREGLE-DELQRQTSTDKWNCPFRLLAKFIKrFNGWILRVKCPGHNHNF 108 889*******9998..5667***********9999.888999999********9997888988888899*86 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MGCMARNIWG AWVFGTEVDL INWVRSTAES IGFVIVIGKS KTDRGYKYSI EFLCSRHGTS 60 SREGLEDELQ RQTSTDKWNC PFRLLAKFIK RFNGWILRVK CPGHNHNFPD SLHGFSQAMR 120 LKESELVFVR QMTKQHVAPR IILSSLKEMD PNNVSTIKTV YNAQEKIRRD SRGDLTPIQL 180 LLRKGYTYYP RINDHTNELD EIFFVHPTSY ALWTTYPEIM LMDSTYNTNM FKLPFFTVVG 240 EKKPNFKWVL ECVKLVIQEQ YYPRVIVTDR DLAFLGACAE EFPNANRLLC RWHINQNVLK 300 HCRHRFDTLK EYEFVRLTWD SMITAPTEEV FRHYYQHLHG LLVRKKGLPI PLDFVDNFWR 360 TLSVPWPVVR NTQEPDEPEY PQKPQGPEEP EYFSCQDDVQ KFQSVYTRAS SLRGIYAPES 420 VSAQQPAVKE SNRGRPSAKD NKSKSKPNIP DLNEEPPTRH RRSYTKPKKV PEVNKESARH 480 SSYVGEPSNV PDLNEGPNEG PSEGDLRHHL YVPDYFSEYC MTEIPALFRR WILGIFNVEG 540 DGNCGYRALA VGLGHQQKIW PRIRALAKEE VDNNEEVYRE MWGNSFTSTR NSMNWFNGAA 600 LRRYWMTMPE MGVVIATALN RPIVCITNSQ SLLCLPLSGS PDSAEILSPV VILRVGNNEC 660 AHFVLAVLDE DSPLPYNQPK WRYFRNVVAA PWEHVFTQRQ RMFRYT

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MGCMARNIWG AWVFGTEVDL INWVRSTAES IGFVIVIGKS KTDRGYKYSI EFLCSRHGTS  60
SREGLEDELQ RQTSTDKWNC PFRLLAKFIK RFNGWILRVK CPGHNHNFPD SLHGFSQAMR  120
LKESELVFVR QMTKQHVAPR IILSSLKEMD PNNVSTIKTV YNAQEKIRRD SRGDLTPIQL  180
LLRKGYTYYP RINDHTNELD EIFFVHPTSY ALWTTYPEIM LMDSTYNTNM FKLPFFTVVG  240
EKKPNFKWVL ECVKLVIQEQ YYPRVIVTDR DLAFLGACAE EFPNANRLLC RWHINQNVLK  300
HCRHRFDTLK EYEFVRLTWD SMITAPTEEV FRHYYQHLHG LLVRKKGLPI PLDFVDNFWR  360
TLSVPWPVVR NTQEPDEPEY PQKPQGPEEP EYFSCQDDVQ KFQSVYTRAS SLRGIYAPES  420
VSAQQPAVKE SNRGRPSAKD NKSKSKPNIP DLNEEPPTRH RRSYTKPKKV PEVNKESARH  480
SSYVGEPSNV PDLNEGPNEG PSEGDLRHHL YVPDYFSEYC MTEIPALFRR WILGIFNVEG  540
DGNCGYRALA VGLGHQQKIW PRIRALAKEE VDNNEEVYRE MWGNSFTSTR NSMNWFNGAA  600
LRRYWMTMPE MGVVIATALN RPIVCITNSQ SLLCLPLSGS PDSAEILSPV VILRVGNNEC  660
AHFVLAVLDE DSPLPYNQPK WRYFRNVVAA PWEHVFTQRQ RMFRYT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	171	EKIRRDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-12	FAR1 family protein