PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011596.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 622aa MW: 70261.3 Da PI: 5.1765

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011596.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.8	1.8e-07	382	406	26	50
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkik 50 +++ ++ KriCR++GI WP k++ Cse_sc011596.1_g020.1 382 KISRSTFKRICREHGILSWPKPKVS 406 4999****************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MPDPQSDRRP YCLKESENCL LIVDKDHEED DCSPPARVFR RGLPEWAPNV TSYLSKDFQR 60 QNHAINCNLC GYLALPVFDS TTKSCIGVLE LLMSSSSTNY AFAVQQVHTA LEILRERKQI 120 CSILKNVCDI HNLPLTQTWA VSSSSTFVSH DQIIDKSCSS FNTKCMGKVC MFTAGLPFYV 180 RESCKWKFWE ECRKRHLEKS RGVVGRALSS EGLCFCGDVT ELNEEEYPLV HDARIYMLSS 240 CFAIFLCSLE GNADYVLEFF LPLNIKDNSH IRNIVQTLKE KIGVVSRFEL GDTSSIEIVG 300 PSTEVSSPFL DTEAVLVQSF STTEPVVENV ANSDDILTNT EPVVENVANS DYILTNTERL 360 AGKNVTDAGK NGNHFRRHRK RKISRSTFKR ICREHGILSW PKPKVSNKTA YVHQSQMLGA 420 TDGSEIGTGT MKETKNNDVS DVLSNLEILL ANKEDGARFG PVPNRVTDLK LLQKSLPEQD 480 LQQPSNVRLV TCESHFSIYQ VARLIVRLKR WRNMLIKPRS DSVVCVSTGR PEDATNSRNP 540 SMSAFLEQNL DIDSLLHPQN MSESEWESDW GLDDEDATNR RNSPMSAFLK QNLDMDSLLE 600 AQIMSESDWE SDWVLDDEGN FM

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MPDPQSDRRP YCLKESENCL LIVDKDHEED DCSPPARVFR RGLPEWAPNV TSYLSKDFQR  60
QNHAINCNLC GYLALPVFDS TTKSCIGVLE LLMSSSSTNY AFAVQQVHTA LEILRERKQI  120
CSILKNVCDI HNLPLTQTWA VSSSSTFVSH DQIIDKSCSS FNTKCMGKVC MFTAGLPFYV  180
RESCKWKFWE ECRKRHLEKS RGVVGRALSS EGLCFCGDVT ELNEEEYPLV HDARIYMLSS  240
CFAIFLCSLE GNADYVLEFF LPLNIKDNSH IRNIVQTLKE KIGVVSRFEL GDTSSIEIVG  300
PSTEVSSPFL DTEAVLVQSF STTEPVVENV ANSDDILTNT EPVVENVANS DYILTNTERL  360
AGKNVTDAGK NGNHFRRHRK RKISRSTFKR ICREHGILSW PKPKVSNKTA YVHQSQMLGA  420
TDGSEIGTGT MKETKNNDVS DVLSNLEILL ANKEDGARFG PVPNRVTDLK LLQKSLPEQD  480
LQQPSNVRLV TCESHFSIYQ VARLIVRLKR WRNMLIKPRS DSVVCVSTGR PEDATNSRNP  540
SMSAFLEQNL DIDSLLHPQN MSESEWESDW GLDDEDATNR RNSPMSAFLK QNLDMDSLLE  600
AQIMSESDWE SDWVLDDEGN FM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	382	RRHRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-74	Nin-like family protein