PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011605.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 407aa MW: 45664.1 Da PI: 8.2313

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011605.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Cse_sc011605.1_g010.1 8 CEICGKGFQRDQNLQLHRRGH 28 *******************88 PP
2	zf-C2H2	12.1	0.00059	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cse_sc011605.1_g010.1 82 WKCAKCSKCYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKSCVHNHPS 60 RALGDLTGIK KHFCRKHGEK KWKCAKCSKC YAVQSDWKAH SKTCGTREYT CDCGTIFSRR 120 DSFITHRAFC DALAEESARV TATSHLNNNV TLVGNVNYHF VGPPILTTPT MPQNFSSNLN 180 PISTNLECHL DINPQDGLSL WTNDRNNNNH TNNHQNMHEL GSIIYADPYQ NHLPRSDYQS 240 NWGVVGVNTS SNNEVIVSAP SLINTQNQLH HTHSTTSMSA TALLQKAAQI GSTTSAATNH 300 SSILGTFGLI FSGDNCTTTT MATTLMATTS TQVHEGDRFC GLYSTTPMVN CSIQSELEND 360 YSSLEEIDPP FKRRRIHIEE HLGAQTRDFL GVGTQPICHS RERFDQL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKSCVHNHPS  60
RALGDLTGIK KHFCRKHGEK KWKCAKCSKC YAVQSDWKAH SKTCGTREYT CDCGTIFSRR  120
DSFITHRAFC DALAEESARV TATSHLNNNV TLVGNVNYHF VGPPILTTPT MPQNFSSNLN  180
PISTNLECHL DINPQDGLSL WTNDRNNNNH TNNHQNMHEL GSIIYADPYQ NHLPRSDYQS  240
NWGVVGVNTS SNNEVIVSAP SLINTQNQLH HTHSTTSMSA TALLQKAAQI GSTTSAATNH  300
SSILGTFGLI FSGDNCTTTT MATTLMATTS TQVHEGDRFC GLYSTTPMVN CSIQSELEND  360
YSSLEEIDPP FKRRRIHIEE HLGAQTRDFL GVGTQPICHS RERFDQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-107	C2H2 family protein