PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011737.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 815aa MW: 91558.8 Da PI: 9.9617

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011737.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.6	1e-20	102	147	3	48
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e +sn qvtfskRr g++KKA+ELS+LC++e+a+++fs+ k + Cse_sc011737.1_g030.1 102 MEKESNLQVTFSKRRSGLFKKASELSILCGVEIAIVVFSPAKKAFS 147 68899**********************************9987665 PP
2	SRF-TF	49.6	5.2e-16	175	219	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++ +vtf+kRr ++KKA+ELS LC+ + aviifs++ k Cse_sc011737.1_g030.1 175 KKIENERSLSVTFAKRRPSVIKKANELSALCGFQSAVIIFSPNEK 219 68***************************************9976 PP
3	SRF-TF	59.6	3.8e-19	328	373	3	48
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e +sn qvtfskRr g++KKA+ELS+LC++e+a++ fs+ k + Cse_sc011737.1_g030.1 328 MEKESNLQVTFSKRRSGLIKKASELSILCGVEIAIVAFSPAKKAFS 373 68899**********************************9987665 PP
4	SRF-TF	49	7.9e-16	462	506	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++ + tf+kRr ++KKA+ELS+LC+++ aviifs++ k Cse_sc011737.1_g030.1 462 KKIENERSLSETFAKRRPSVIKKANELSTLCGVQSAVIIFSPNEK 506 68***************************************9976 PP
5	SRF-TF	57.3	2e-18	628	668	8	48
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + + tfskRr g++KKA+ELS+LC++e+a+++fs+ k + Cse_sc011737.1_g030.1 628 RSKCTFSKRRSGLFKKASELSILCGVEIAIVVFSPAKKAFS 668 6789******************************9987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence
MLCHNQLRCC QRLTKRRINL LELKTSWNGS YANRLNGDPS NKVANYRILI APAEQTKKAH 60 DTIDIQISYF SRRKLSQVPF SKWRLDRARH SKGRQKIKMQ KMEKESNLQV TFSKRRSGLF 120 KKASELSILC GVEIAIVVFS PAKKAFSFGH PSVEMITDRY LRENIPSSRK KIEKKKIENE 180 RSLSVTFAKR RPSVIKKANE LSALCGFQSA VIIFSPNEKS VYSFGDPSLE VLVSGYLEHY 240 SGAQSSQTSG LVEQFQNPHT ENFNTQLNSM LARLESEQNI TENLKKTKKE NQGKNWYNAP 300 IENLGIEELT VLKNATLEGR QKIKMQKMEK ESNLQVTFSK RRSGLIKKAS ELSILCGVEI 360 AIVAFSPAKK AFSFGHPSVE MITDRYLREN IPSKSLRLEE LEQLKVQLGV IGSNIEEQNE 420 RSVAEAANAM AVVPISSSTG IDSGYGLSIT PHGLVVRNLK KKKIENERSL SETFAKRRPS 480 VIKKANELST LCGVQSAVII FSPNEKSVYS FGDPSLEVLV SGYLEHYSGA QSSQTSGLVE 540 LFQNPHTENF NTQLNSMLAR LESEQNITEN LKKTKKENQG KNWYKAPIEN LGIEELTVLK 600 NATLEVKKQA DQGIMEFGGY RIVRAAKRSK CTFSKRRSGL FKKASELSIL CGVEIAIVVF 660 SPAKKAFSFG HPSVEMITDR YLRENIPSSS NTSLLMEAHR NAQIHELNRQ LTYVDCQLDI 720 EKNKSDELIK IRKEGQDNHW WEAPIESLRL EELEQLKVQL GVIGSNIEEQ KERTVAEAAN 780 AMAVVPISSS TGIDSGYGLS ITPHGLVLGY GHFGN

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence

MLCHNQLRCC QRLTKRRINL LELKTSWNGS YANRLNGDPS NKVANYRILI APAEQTKKAH  60
DTIDIQISYF SRRKLSQVPF SKWRLDRARH SKGRQKIKMQ KMEKESNLQV TFSKRRSGLF  120
KKASELSILC GVEIAIVVFS PAKKAFSFGH PSVEMITDRY LRENIPSSRK KIEKKKIENE  180
RSLSVTFAKR RPSVIKKANE LSALCGFQSA VIIFSPNEKS VYSFGDPSLE VLVSGYLEHY  240
SGAQSSQTSG LVEQFQNPHT ENFNTQLNSM LARLESEQNI TENLKKTKKE NQGKNWYNAP  300
IENLGIEELT VLKNATLEGR QKIKMQKMEK ESNLQVTFSK RRSGLIKKAS ELSILCGVEI  360
AIVAFSPAKK AFSFGHPSVE MITDRYLREN IPSKSLRLEE LEQLKVQLGV IGSNIEEQNE  420
RSVAEAANAM AVVPISSSTG IDSGYGLSIT PHGLVVRNLK KKKIENERSL SETFAKRRPS  480
VIKKANELST LCGVQSAVII FSPNEKSVYS FGDPSLEVLV SGYLEHYSGA QSSQTSGLVE  540
LFQNPHTENF NTQLNSMLAR LESEQNITEN LKKTKKENQG KNWYKAPIEN LGIEELTVLK  600
NATLEVKKQA DQGIMEFGGY RIVRAAKRSK CTFSKRRSGL FKKASELSIL CGVEIAIVVF  660
SPAKKAFSFG HPSVEMITDR YLRENIPSSS NTSLLMEAHR NAQIHELNRQ LTYVDCQLDI  720
EKNKSDELIK IRKEGQDNHW WEAPIESLRL EELEQLKVQL GVIGSNIEEQ KERTVAEAAN  780
AMAVVPISSS TGIDSGYGLS ITPHGLVLGY GHFGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-39	M-type_MADS family protein