PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011871.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22260 Da    PI: 9.9757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011871.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171559145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           kri+n++ r vt skR ng++KKA EL +LC++  avi f   gk
  Cse_sc011871.1_g010.1 15 KRINNERERAVTMSKRHNGLFKKACELATLCGVHLAVIFFTIGGK 59
                           79************************************9976665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARLTKGGRK KIEIKRINNE RERAVTMSKR HNGLFKKACE LATLCGVHLA VIFFTIGGKS  60
LSFGSPSICS VLKKFMKTNE VDEQSENYIT RLENSAKESR LQELNKNYNE ISEKLINERK  120
RGQVLEVILK GSFGGKTSGE CISGLVIEKL VKLKFCVIEL EKILKVKCES RSACSSNNDD  180
YKVDLSKMEV SKDYLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-19M-type_MADS family protein