PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011972.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family YABBY
Protein Properties Length: 234aa    MW: 25934.4 Da    PI: 8.114
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011972.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY210.55.9e-65291946170
                  YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnveke 89 
                             ++q+Cyv+C+ C+t lavsvP tslfk+vtvrCGhCt+ll +++   + + +++++++   ++      +  l ++  n  sn   +
  Cse_sc011972.1_g050.1  29 CADQLCYVHCTLCDTDLAVSVPCTSLFKTVTVRCGHCTNLLPMSMPGLM-MPPSMNQFHFGHNNFfspsTQTLLDDQIPNGGSNFLIN 115
                            689***************************************9876654.44555543322222222224444444445555555555 PP

                  YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            +   ++ s +   +   +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  Cse_sc011972.1_g050.1 116 RDYANDFSLT--ARGGFRELPKPPVTNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194
                            5555555543..577899****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MSISSSTTSP TVPQLLLHHH HNHLAPPSCA DQLCYVHCTL CDTDLAVSVP CTSLFKTVTV  60
RCGHCTNLLP MSMPGLMMPP SMNQFHFGHN NFFSPSTQTL LDDQIPNGGS NFLINRDYAN  120
DFSLTARGGF RELPKPPVTN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA  180
AKNWAHFPHI HFGLMPDQTS AVNKSSMRQQ DHMADGGFMK DGFFASANVG VSPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-66YABBY family protein