PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012039.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NAC
Protein Properties Length: 303aa    MW: 34950.3 Da    PI: 6.0017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012039.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.8e-50101381129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp ++k +++ewyfFs rd+ky+tg r+nrat+sgyWkatgk
  Cse_sc012039.1_g010.1  10 LPPGFRFYPSDEELVCHYLYKKIAREDVLK-GTLVEIDLHTCEPWQLPDTAKLNSSEWYFFSFRDRKYSTGFRTNRATTSGYWKATGK 96 
                            79***********************99655.78***************88888999******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d++v++  +g  vg++ktLvfyk+rap+g kt W+mhe+rle
  Cse_sc012039.1_g010.1  97 DRTVIDPiTGVIVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138
                            ******999999***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIAREDVLKG TLVEIDLHTC EPWQLPDTAK  60
LNSSEWYFFS FRDRKYSTGF RTNRATTSGY WKATGKDRTV IDPITGVIVG MRKTLVFYKN  120
RAPNGIKTGW IMHEFRLENP SIPPKEDWVL CRVFYKAKGD NSNEHCPQDI HHNMIHNVTS  180
PNPDASSTLT TLCQAPPCVH HHPLSTNLSK QSPPLPIHHH PRQQNCFGLP PQEYNYQNLL  240
QLPHQDPILK ESIDQIIISS NNKCEDKYDF LYDLDLEDFV PSSNVQDMEI EDDDNDNGVV  300
FYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-89NAC family protein