PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012249.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 260aa MW: 27747.5 Da PI: 8.4186

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012249.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.1e-09	67	91	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC++++ Ck+Gd+C+FaHg Cse_sc012249.1_g020.1 67 KSKLCNRYSTPEGCKFGDQCNFAHG 91 668*********************9 PP
2	zf-CCCH	30.2	7.9e-10	228	251	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C +f + G C +G++C+FaHg Cse_sc012249.1_g020.1 228 KTKMCENFTK-GSCTFGEKCQFAHG 251 899*****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MLYFMSSLYC EPINVFYCSI EGCPFGENYH FLHLSPGGYN AVAKLMNLPP ISAAPATTQN 60 GPTSAVKSKL CNRYSTPEGC KFGDQCNFAH GDWELGKAAP THEDPRTLGP IQSHPAPKST 120 AASFGASATG KISVDASLAG AIIGTTSVNS KQICRQTGVR LSIRDHESDS NLRNIELEGT 180 FDKINEAQAM VRELILSLSI KPAVTSPLSR PPAMHHGGPS HAPKTNIKTK MCENFTKGSC 240 TFGEKCQFAH GAASRSKGVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-51	C3H family protein