PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012326.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 340aa    MW: 38568.5 Da    PI: 7.6502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012326.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48.1e-091350148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEd++l++ ++ +G +        +   R++k+c++rw +yl
  Cse_sc012326.1_g040.1 13 RGLWSPEEDDKLIKHITNHGHR--------L--QRCGKSCRLRWINYL 50
                           788*****************99........5..5************97 PP
2Myb_DNA-binding52.79.9e-175699146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Cse_sc012326.1_g040.1 56 RGAFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 99
                           89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGHHCCSKQK VKRGLWSPEE DDKLIKHITN HGHRLQRCGK SCRLRWINYL RPDLRRGAFT  60
EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL DPNTHNLLSP  120
HQIPIINANN SKNIDPNKPV FSIINNTSSQ TKDTKKVQAF QPHFSTVVND DHVTSQKLYE  180
NSTTLKSSNL DYHDYNLLMK NDASHQSTMG FSSQPFVEST KMHMPILLPV SSSSNHIDYG  240
TMMQSWGGNV NVTNVGAAFV NTRRPEAYQE MVQPHMVVAQ EFVNKGLDLS DGGEVQGQTN  300
IDMSSFEGCN IDLEFMEAAF MPCGMYSNVG TLDHLAWDCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-73MYB family protein