PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012407.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 187aa MW: 20604.5 Da PI: 6.4933

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012407.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.4	2.1e-37	8	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aC++lrrkC+k+Cv+apyf p+++ +++f++vh++FGa+n +ll ++p ++r da+ s++yeA r+rdPvyG+v+++++lqqq Cse_sc012407.1_g040.1 8 PCGACRFLRRKCVKGCVFAPYFePDDRgTADFEAVHRVFGAKNAARLLLRTPANKRLDAVVSMCYEALSRVRDPVYGCVAHVFTLQQQ 95 7*******************7777778******************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+aela+++++ Cse_sc012407.1_g040.1 96 VDNLQAELAYVQAR 109 ********9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MSDNGGSPCG ACRFLRRKCV KGCVFAPYFE PDDRGTADFE AVHRVFGAKN AARLLLRTPA 60 NKRLDAVVSM CYEALSRVRD PVYGCVAHVF TLQQQVDNLQ AELAYVQARL SILKHGSCQL 120 PMDLQPRSSI SFSGSSLTSL HFGQTPVDSS CLSSNDNTSL GEELFEEDDL EILARELVTK 180 YLPVPKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	2e-53	LBD family protein