PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012566.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 702aa MW: 79046.1 Da PI: 5.6167

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012566.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.8	6.8e-16	515	558	4	47
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 + sle++sk+F + i++AA eL+v+ LK+iCR +GI+RWP Cse_sc012566.1_g020.1 515 SFSLEEISKHFGMRIEKAAGELNVSIWRLKKICRGLGISRWPNK 558 5689**************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MEMNNTGEDS SRSKVMEALE SKYSCLFDLS SAPRSFNDPG RRYLTPLRVY GNKEVDDEPV 60 TSSFSKLLED QNIIDPQKIK EKITHALSNL RFRDPHVLVQ FWSPATLRKR CVLTTFDQPF 120 GLGVVDEALY LHRLESEQRI FFVDGEHREG IGPPGRVYHQ KMPEWSLGVH ALPVRQSAQD 180 LSSCYTTHGY INLPVFEPDS DRCVGVLEII TSSNHVDYTF EVQEVSRALK EENLKCPNLF 240 EDYSFYTQVG DERRQNELDE IFVALKSICD TRNIPLAQTW ALCGHSSVVA NSGNLEHSCS 300 SFDRKCIGKL CMSTYGLPVY VRDQRMWGFH DACRERHLDK SHGVVGRSLS SCAVCLKRIE 360 RDIEYVIELV LPPHNTNEAD LQSLVKTLKL HIKNVSSVEL GNMSLLAFSG DPHDWNLESP 420 PSPITLLTEE EVLKEPGNHR VWNYVTDSEG QSGVDHVEHM EDDQSENELM KNAAAGTSSS 480 VVPCLDVGTE DVDNNKGKRG RKNDRDKKRK TSEISFSLEE ISKHFGMRIE KAAGELNVSI 540 WRLKKICRGL GISRWPNKNH KRDSLLKSNQ TDAVIHTSEG GPTPVLGVSC EPVLLDGSAQ 600 PETTISVQNT SAANTLENLK IKATYKESTI KFPFRLSDGF AKLEELVARW FQLSVQSFRL 660 KYEDEEGDML LLQCDSDLME SVSSSGQPGD QTVIKLFVLP VA

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MEMNNTGEDS SRSKVMEALE SKYSCLFDLS SAPRSFNDPG RRYLTPLRVY GNKEVDDEPV  60
TSSFSKLLED QNIIDPQKIK EKITHALSNL RFRDPHVLVQ FWSPATLRKR CVLTTFDQPF  120
GLGVVDEALY LHRLESEQRI FFVDGEHREG IGPPGRVYHQ KMPEWSLGVH ALPVRQSAQD  180
LSSCYTTHGY INLPVFEPDS DRCVGVLEII TSSNHVDYTF EVQEVSRALK EENLKCPNLF  240
EDYSFYTQVG DERRQNELDE IFVALKSICD TRNIPLAQTW ALCGHSSVVA NSGNLEHSCS  300
SFDRKCIGKL CMSTYGLPVY VRDQRMWGFH DACRERHLDK SHGVVGRSLS SCAVCLKRIE  360
RDIEYVIELV LPPHNTNEAD LQSLVKTLKL HIKNVSSVEL GNMSLLAFSG DPHDWNLESP  420
PSPITLLTEE EVLKEPGNHR VWNYVTDSEG QSGVDHVEHM EDDQSENELM KNAAAGTSSS  480
VVPCLDVGTE DVDNNKGKRG RKNDRDKKRK TSEISFSLEE ISKHFGMRIE KAAGELNVSI  540
WRLKKICRGL GISRWPNKNH KRDSLLKSNQ TDAVIHTSEG GPTPVLGVSC EPVLLDGSAQ  600
PETTISVQNT SAANTLENLK IKATYKESTI KFPFRLSDGF AKLEELVARW FQLSVQSFRL  660
KYEDEEGDML LLQCDSDLME SVSSSGQPGD QTVIKLFVLP VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-77	Nin-like family protein