PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012640.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB_related
Protein Properties Length: 224aa    MW: 25990.1 Da    PI: 9.7743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012640.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-143391148
                           TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                           r+ +T  Edel++ ++ +lG++             W+ I+++++ +Rt++++k+rw++yl
  Cse_sc012640.1_g020.1 33 RDTFTFHEDELILTLHGMLGNNkyaiyldtlnlhKWSQISQHLP-RRTDNEIKNRWHSYL 91
                           7899****************************************.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MVLAAGIRSP FMQRNGKSCR LRWINYLGPG LKRDTFTFHE DELILTLHGM LGNNKYAIYL  60
DTLNLHKWSQ ISQHLPRRTD NEIKNRWHSY LKKKVDKQTD SSLESSEAYG CRKLPKILFA  120
DWLCEKGKGD DAFRLFDEIK TVNDFVNSWD VCNSILDSFW KESKAAKAVL FFEKWRFLLK  180
ARSPPLEVEQ AQVHGLPSFI IINTTDVILL IVLSSRIRSV VLNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-28MYB family protein