PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012654.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 26892.1 Da PI: 6.7841

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012654.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtf+kR+ng+lKKA+ELSvLCdaeva+iifs++gklye++s Cse_sc012654.1_g020.1 10 RIENKINRQVTFAKRKNGLLKKAYELSVLCDAEVAIIIFSNDGKLYEFCS 59 8***********************************************96 PP
2	K-box	90.5	3e-30	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +++s++qe+ kLk++++ Lq++qRh+ Ge+Le+L keL qLe+qL++sl+++Rs+K++++l+q++ lq+ke++l e nk+Lr Cse_sc012654.1_g020.1 82 HQDPDTQSCYQEYLKLKAKVDILQQSQRHYNGEELEQLGSKELDQLERQLDSSLRQVRSTKTKHMLDQLSGLQQKEQSLLEVNKSLRL 169 678899********************************************************************************** PP K-box 97 klee 100 klee Cse_sc012654.1_g020.1 170 KLEE 173 9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MGRGKVELRR IENKINRQVT FAKRKNGLLK KAYELSVLCD AEVAIIIFSN DGKLYEFCSG 60 SSMSKTLERY HRCSYGAMEA NHQDPDTQSC YQEYLKLKAK VDILQQSQRH YNGEELEQLG 120 SKELDQLERQ LDSSLRQVRS TKTKHMLDQL SGLQQKEQSL LEVNKSLRLK LEESTAAYQL 180 SWAAHERNFE NRQQLPPAHQ EAYIQRLDCD ENMQNGYNNE APNDEIDARN TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	2e-84	MIKC_MADS family protein