PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012685.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 393aa MW: 43451.4 Da PI: 9.4827

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012685.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	8.9e-41	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ keyhr+hkvC hsk+p+v+v+g+e+rfCqqCsrfh++sefDeekrsCrrrL++hn+rrrk+++ Cse_sc012685.1_g030.1 151 RCQVEGCNLDLSSSKEYHRKHKVCASHSKSPKVIVAGVERRFCQQCSRFHSMSEFDEEKRSCRRRLSDHNARRRKPNQ 228 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEWNTKWEWE NLDMYNSKSI MSPKKTQPAY WGVGEVEAID GSISFNVSGV VGGSGGSVSD 60 VGNNSSGKSS ISASTESSMK EGMKGSGYSF VGSVSSGEPF IGLKLGKRTY FENGYAKNNT 120 NKAYSQLAVP ASTIPTGKKV KSAYQTTPIV RCQVEGCNLD LSSSKEYHRK HKVCASHSKS 180 PKVIVAGVER RFCQQCSRFH SMSEFDEEKR SCRRRLSDHN ARRRKPNQEA MRFNPAYSSF 240 YGTESLDVLS HSTGVQLSDV LNMPNLARNR LVPSKGARAE IFDQGYKDSL SSNVDAVDLR 300 RALSLLSNNS WGSSELDHPM LSIVPTMPHH GTMHAAPHAS PLSSQQYWQA NQQSTDSRVH 360 ALATKTSNTS NHFQEFQIFK PQYESSFLFH PNS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEWNTKWEWE NLDMYNSKSI MSPKKTQPAY WGVGEVEAID GSISFNVSGV VGGSGGSVSD  60
VGNNSSGKSS ISASTESSMK EGMKGSGYSF VGSVSSGEPF IGLKLGKRTY FENGYAKNNT  120
NKAYSQLAVP ASTIPTGKKV KSAYQTTPIV RCQVEGCNLD LSSSKEYHRK HKVCASHSKS  180
PKVIVAGVER RFCQQCSRFH SMSEFDEEKR SCRRRLSDHN ARRRKPNQEA MRFNPAYSSF  240
YGTESLDVLS HSTGVQLSDV LNMPNLARNR LVPSKGARAE IFDQGYKDSL SSNVDAVDLR  300
RALSLLSNNS WGSSELDHPM LSIVPTMPHH GTMHAAPHAS PLSSQQYWQA NQQSTDSRVH  360
ALATKTSNTS NHFQEFQIFK PQYESSFLFH PNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	4e-50	SBP family protein