PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012723.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22535.8 Da    PI: 10.6105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012723.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.6e-182969242
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Cse_sc012723.1_g010.1 29 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 69
                           89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MFNAMILRNM LPVVENKVAM TRKKVKLAFI TNDSARKATF KKRKKGLMKK VNELSTLCGI  60
DACAIIYSPY EAQPEVWPSN IGVQHVLAQF KRMPEMEQSK KMFKRMPEME QSKKMVNQES  120
FIRQRITKAN EQLKKQIKEN REKEMIEVMY QCLTGKGSIT NLILPDLNDL GGLVDQTLKD  180
INRRIESLKK TVPGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12244RKKVKLAFITNDSARKATFKKRK
24145KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-65M-type_MADS family protein