PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012846.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 239aa    MW: 26433 Da    PI: 7.1761
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012846.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26075.41e-234108199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damsslvyeAearardPvyGavgvilk 82 
                            +C++C+vlr++C +dC+l+p++     p++q++++ +++k++G+  +l+l++a p++ r+ +++  ++  A+ r+ +P yG+vg+i++
  Cse_sc012846.1_g020.1   4 SCNGCRVLRKGCDEDCILRPCLtwitsPESQANATLFLAKFYGRVGLLNLINAGPHHLRPgTTILHIIRSACGRIINPAYGSVGLIWS 91 
                            6*********************************************************85267889********************** PP

                 DUF260  83 lqqqleqlkaelallke 99 
                            ++++ +q++++ +l+++
  Cse_sc012846.1_g020.1  92 GNWEQCQAAVDSVLQGS 108
                            *********99888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTMSCNGCRV LRKGCDEDCI LRPCLTWITS PESQANATLF LAKFYGRVGL LNLINAGPHH  60
LRPGTTILHI IRSACGRIIN PAYGSVGLIW SGNWEQCQAA VDSVLQGSTI MQLPSSNNHD  120
VSQQSSIMPI EGCDIRHLSK DPNDDHRVKT LKKFKKPRCE FGSRQVVSTS VVGTEESTKC  180
KVPERKREEL EVNQAPNHVP ALCAEINLLD NVDGVALLER DDRQIHCDES GKSNYHADS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-62LBD family protein