PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012936.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 279aa    MW: 31920.3 Da    PI: 9.2155
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012936.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-17953145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           +ri++k++r +tf+ R+  +lKKA EL +LC+++v+vi+fs +++
  Cse_sc012936.1_g020.1  9 ERINDKRKRITTFTGRKDSLLKKARELGTLCGVNVSVIMFSDRQQ 53
                           69***************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRVKITLER INDKRKRITT FTGRKDSLLK KARELGTLCG VNVSVIMFSD RQQNAEIFPQ  60
DPLYLKDMIK NYKSYPGKIK SYGLWDFCKD RKNKIEEELK KAKKENLEAK YPTWFDSLDK  120
SSLSELNDLS SALGTKINEV RTKIHLLKLT KTSKILNLDA QVSLMMPQSN PNPITMMTPI  180
DYNNNNNNNS FSSDDHVESC RSSNTNVDGG YYPVMLMGRD IRSYDHDQRF MQSLDSKSLA  240
TTTEDNGGSY DGVNSGLQPK VLQPLEQPQC MDMLSRFRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-13M-type_MADS family protein