PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012971.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26875.4 Da    PI: 10.2756
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012971.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.5e-251059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n + rqvtfskR  g+lKKA+EL vLCdaev ++ifsstg+l+ y+s
  Cse_sc012971.1_g050.1 10 RIDNVTSRQVTFSKRSRGLLKKAKELAVLCDAEVGLVIFSSTGRLHQYAS 59
                           8***********************************************86 PP
2K-box76.85.7e-2682171998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            + +++ e ++ e+a+L+k+++nLq++qR+llG++L+ L++++Lq+Le qLe+slk++R  K+++l+++++el  k+  + +enk+L+k
  Cse_sc012971.1_g050.1  82 NPTSEVEFWRGEVARLRKQLQNLQQSQRQLLGQELNGLNVENLQNLEVQLETSLKHVRRNKEQILTDELKELHWKKSLMAHENKELHK 169
                            567889********************************************************************************** PP

                  K-box  97 kl 98 
                            k+
  Cse_sc012971.1_g050.1 170 KI 171
                            98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIAIQR IDNVTSRQVT FSKRSRGLLK KAKELAVLCD AEVGLVIFSS TGRLHQYASS  60
SMEKVTERYR TAKDEHHSQL LNPTSEVEFW RGEVARLRKQ LQNLQQSQRQ LLGQELNGLN  120
VENLQNLEVQ LETSLKHVRR NKEQILTDEL KELHWKKSLM AHENKELHKK INLLHQQRAE  180
LQKKIYGSRS SDEANRNTNA SCSLSTDNSL NPPRLSQQPH NNDIPEEAMN LRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-64MIKC_MADS family protein